Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmetu02g0320 | ATGACGCAAAGAAGGGAGTCAACTGAAGATGCATCTAAGACATCGAGTTCAGATGGAAGCAAGAAGAAGATACAATGCAAACGTGGACCGACAGGGATGTCAGAGATCACACGGGTTAGTAGTGATGGCCATAGGAGAGTCGTTGAGTATAATGAACTCGGTCAACCTATTGGGGACAGTGCCATCAAGCTAAAAAGTTTCATTGGATGGTGGGTTCGTAGTAGATCCAAGATCCAAGAAGAGCATCATACAAAATGCGAGTCTTTGCTTCCGGCAATTCAAGTCAGCACTCACCACCAAGTGATTAGCAGTAAGGGTCGGAAGCGGCGGAAAAACAATAAATACAACCATAGGATGGCTCGAAAAGGTTATGCAAACCTTGTGGAGGAGATGAAAGCAAGCACATCCACTGGTTCTACGATCAATTGTGCTTTAGTATGGAAGAAAGCACGAACAGACAAGGACGAAAACATTCCTGACGTGGACACCAGGGAGGTAGTCAGTCGTATTGACAAACTTCTGCAGTCCCATACTACGGCCGATTCAATGGGGGAGTCGACTACAGATATACTATCACAAGCCATCGGAGAAAATGATCCACCTAGAAGGATCCGAGGGGTGGCTCGTATATTGGAGTTGGAAGCAAAATTAATGAACCATAGAAGGGTTCAAGAAATGCCAACAATTGGAGATGATATCAATGAGAGCAAGGTCAAGAGTGAAATGACTTCGAGAAGCATGGACACGTCAGAAGACGAATGTGATGAGGACATAGAAGATGGAATAAGGACCATTGTGAATGAGGAAAGAGAAATAGAGGACTTAGCAGAGGAAGAAGAAAACAAAGATGAAGAGCAGGGTAAAGGCTTTTGTAAGTTAGCAGGGACTTCGACAAAAGTAAAGGATGGGACTTCGTGTTTACTTGCCACTGGGAGTCGGGCGAATGTTGTTGGGGCTGGCACTATATTTGACTACGACATGGAAGGGGACAACGTCAAGGTTTCTGTGGACGTGGTTGTTGACAGTGACTACTCCGTCCCTATTCCAGAGAATGAAAGTACATATGTGCTAAGGCAAGAGGTCGGATCACAGTTGTTATGGCCTCGTCATTTGGTAATTCCTAGGACGAGAAGCCACCTCTACAATGTTATGGAGAAGTTGAGAACATTGGGATTGTATAAGTTTATGGATGCCGACTCAGTCTTCGTTGGTACGAGTAAAGATAGTCGAGCACAACTACTTAATGTTAGATTGCTCGCCACTAACCATCGAGAAATTCTGATGTTCCCATACAACTTAGGGGCATTCGAACTGGGAAGGAAGAAGAAACATGTCTGGAGGGTCATCAAGTGTCCAAAGCAAGGAGGGGTCGTCAAATGCGGGTATTATGTCATGCGATTCATGCGATATATCATTATGTCAACTAGCATAACAATTTCAGAAGTTATAGAAGGATCACCCCCGACATACTCAAAGGAACATATTGACGTTGTTAGATCAGAGTGGACCAAGTTCATAGGGACGCATATTAATGCCACAAGGGTGGGAATGTATAAATTGAAGTTTTTGATGGACTGGACCATAGCTACTAAATGGGTGGTTGACTTGAATCAAAGAGAAGAAAGATGCTTTATAGTTTTGGTAGATGGTACAATCAAGCCTAATCTTCATGACCTTATTTGTAGAAATGCACAATCAATGAGGAATAAACCGAAACATCCAAATTATTACAGTTTCAACTCGACGGTTTTGAGGAAGAGGGATCTATCTTTAATGGGAGGCGTCGAATCCGGACTAGGACTTGTCAAACTTCTATCAGGTGAATGTACATGTAAACGTGCATGGGGAATAGACAGCGAAGAACTGGAGATGCTAAACGAACATATAGGTCGGTTGAAATTGAATGTGGACATGGCATGTCATTCGAATAGAGATGGTGTGGGGCTAGGTGTCGTGGTGCGTGACAATGGCAACAAGTTGGTTGTGGTTCATGTTGTGTTCATTTCGGGGAGGTTGGAGGTGGAAGCTGGCGAGGTTCTCGCCTTGCTCCATGGGCTGCAGATGTTGAAGATGATTGTTGATGGCAAGGTGTTGGTGGAATCAGATGCCAAGGAATGGTTCAAATGCTAA | 2130 | 43.99 | MTQRRESTEDASKTSSSDGSKKKIQCKRGPTGMSEITRVSSDGHRRVVEYNELGQPIGDSAIKLKSFIGWWVRSRSKIQEEHHTKCESLLPAIQVSTHHQVISSKGRKRRKNNKYNHRMARKGYANLVEEMKASTSTGSTINCALVWKKARTDKDENIPDVDTREVVSRIDKLLQSHTTADSMGESTTDILSQAIGENDPPRRIRGVARILELEAKLMNHRRVQEMPTIGDDINESKVKSEMTSRSMDTSEDECDEDIEDGIRTIVNEEREIEDLAEEEENKDEEQGKGFCKLAGTSTKVKDGTSCLLATGSRANVVGAGTIFDYDMEGDNVKVSVDVVVDSDYSVPIPENESTYVLRQEVGSQLLWPRHLVIPRTRSHLYNVMEKLRTLGLYKFMDADSVFVGTSKDSRAQLLNVRLLATNHREILMFPYNLGAFELGRKKKHVWRVIKCPKQGGVVKCGYYVMRFMRYIIMSTSITISEVIEGSPPTYSKEHIDVVRSEWTKFIGTHINATRVGMYKLKFLMDWTIATKWVVDLNQREERCFIVLVDGTIKPNLHDLICRNAQSMRNKPKHPNYYSFNSTVLRKRDLSLMGGVESGLGLVKLLSGECTCKRAWGIDSEELEMLNEHIGRLKLNVDMACHSNRDGVGLGVVVRDNGNKLVVVHVVFISGRLEVEAGEVLALLHGLQMLKMIVDGKVLVESDAKEWFKC | 709 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8797603 | 8804810 | - | PI0026596.1 | Cmetu02g0320 | 348332 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmetu02g0320 | 709 | Gene3D | - | 629 | 709 | IPR036397 | GO:0003676 | |
| Cmetu02g0320 | 709 | Coils | Coil | 258 | 288 | - | - | |
| Cmetu02g0320 | 709 | Pfam | Plant transposase (Ptta/En/Spm family) | 93 | 209 | IPR004252 | - | |
| Cmetu02g0320 | 709 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cmetu02g0320 | 709 | Pfam | Reverse transcriptase-like | 635 | 706 | IPR002156 | GO:0003676|GO:0004523 | |
| Cmetu02g0320 | 709 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cmetu02g0320 | 709 | SUPERFAMILY | Cysteine proteinases | 423 | 510 | IPR038765 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmetu02g0320 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu12g0917 | Cmetu-Chr12:9427045 | 1.90E-177 | dispersed | |
| Cmetu06g0375 | Cmetu-Chr6:16414904 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 2.20E-50 | dispersed | |
| Cmetu06g2360 | Cmetu-Chr6:19086004 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 6.40E-11 | transposed | |
| Cmetu01g2675 | Cmetu-Chr1:18455491 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 1.20E-57 | wgd | |
| Cmetu01g1618 | Cmetu-Chr1:9822796 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 1.60E-94 | wgd | |
| Cmetu01g0939 | Cmetu-Chr1:14012504 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 5.00E-28 | wgd | |
| Cmetu10g0880 | Cmetu-Chr10:3082009 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 2.70E-68 | wgd | |
| Cmetu10g1741 | Cmetu-Chr10:6967104 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 1.30E-07 | wgd | |
| Cmetu11g1995 | Cmetu-Chr11:17937768 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 2.30E-39 | wgd | |
| Cmetu11g0324 | Cmetu-Chr11:14458979 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 5.90E-19 | wgd | |
| Cmetu12g1574 | Cmetu-Chr12:17564244 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 1.80E-129 | wgd | |
| Cmetu12g0320 | Cmetu-Chr12:17191547 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 9.30E-93 | wgd | |
| Cmetu12g2115 | Cmetu-Chr12:14520078 | Cmetu02g0320 | Cmetu-Chr2:8797603 | 7.90E-38 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu03g0216 | Cmetu-Chr3:9763918 | 3.60E-155 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu04g0859 | Cmetu-Chr4:17034368 | 3.90E-93 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu04g0059 | Cmetu-Chr4:20849525 | 5.10E-39 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu05g0026 | Cmetu-Chr5:14167904 | 2.20E-21 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu06g0332 | Cmetu-Chr6:10665969 | 2.20E-80 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu06g0739 | Cmetu-Chr6:9553841 | 1.30E-17 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu06g0150 | Cmetu-Chr6:15581263 | 5.40E-119 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu07g1385 | Cmetu-Chr7:18195688 | 6.60E-36 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu07g2076 | Cmetu-Chr7:15650493 | 1.30E-104 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu07g1274 | Cmetu-Chr7:17900935 | 2.80E-120 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu07g0016 | Cmetu-Chr7:14111486 | 9.00E-38 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu07g1321 | Cmetu-Chr7:10828173 | 2.60E-129 | wgd | |
| Cmetu02g0320 | Cmetu-Chr2:8797603 | Cmetu09g0162 | Cmetu-Chr9:15849921 | 1.30E-43 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g417 | . | Blo12g00708 | Bda01g00888 | Bda03g00489 | Bpe02g00111 | Bpe04g00443 | . | Bma01g02610 | Cmo05g00528 | . | Cma01g01610 | Cma09g00561 | Car01g01228 | . | . | Cpe06g00427 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone4ag1332 | Cone7ag1597 | Cone17ag1213 | Cone20ag0512 | Lsi04g02238 | Csa03g04449 | Chy04g00251 | . | Blo17g00117 | Blo18g00131 | Bda11g00768 | Bda13g01399 | Bpe02g01124 | Bpe14g00456 | Bma01g01401 | Bma02g00139 | Sed14g0863 | Cmo01g01656 | Cmo09g00551 | . | . | Car05g00451 | Car09g00492 | Cpe11g00441 | Cpe02g00370 | Bhi09g02441 | Tan01g3792 | Cmetu02g0320 | . | Hepe01g2131 | . | . | Cla11g01386 | Cam11g1443 | Cec11g1469 | Cco11g1465 | Clacu11g1600 | Cmu11g1419 | Cre11g1839 | Lsi08g00889 | . | . | Cme04g00281 |