Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0350 ATGTGTGTTATGGGATCTACTACAGAATTGAGCTTGGAATGTAAAGTTGAAAGTTATTCAATGTTGCTTAAATATTCATTTGGAGATCATCATGATCATGATCAGTCTTATGATAAGCTTCAAGATTTTGTTTCTAGGCTTGAAGAAGAACGTCTCAAAATTGATGTCTTTAAACGGGAGCTTCCACTTTGCATGCAGCTTTTAACTAATGCTGTAGAGACATCGAGGCGACAGTTACAAGCATGCAAAACGATGGAGGCAGTGGCGGCCGTGGTAGCACCAACAGAGCCAATTCTAGAAGAATTCATGCCATTGAAAAACTCAACGCCGGCGGAGGATGAAAAACCGCCGATAATAACTTCCGACAAGGCAAATTGGATGACGTCAGTTCAGCTTTGGAGTCAAGCAGGCGATGTAAGCAAACAACAATCTGAATCTACTGACGATCACTCCAAATTACAAGATTGTAATAATAATAATAAGGACAATAATTTAGAAACATGCAGCCAAAGAATTAATAACAATGGAGCTTTTGTTCCTTTCAACAAAGATCGGAGCTCCGGTCCGGCGGCGAAAATGGAGCTACTGGAGAAAGGTGAGAAGAAGAATTGTAGCGATAATAATTGTAGTATTGATGGTGGGGTTGTAATGGCGGCGGAGCAAAGGTCTGAAAATGGAGCGGCGGAGGTGGGATCAGCTCCGACCACCACTCAGACACACCGAAAAGCTAGACGGTGCTGGTCGCCGGACTTACACCGGAGATTTGTCAATGCTCTTCAAATGCTCGGTGGTTCTCAAGTTGCCACGCCAAAGCAGATAAGAGAGTTGATGAAAGTAGACGGTTTAACGAACGATGAAGTAAAAAGCCATCTTCAGAAATACCGGCTCCACACGAGACGACCCGGTCCAACCCAACAAGCATCAGGACCGCCAGCGGCTCAGCTCGTAGTACTCGGTTTAGGCGGTTTATGGGTCCCACCAGAGTACGCTGCAGCTGCGGCGGCGCCGCCCGCCCTGTACGGCCCAGCGGCCACGTCTCATCCGGCTTCCCACTTCTACACGGCGCCAGAATTTTATGCAAGAACGGCGCCGGCTCCGCATCTGCAGCATCATCATCACCAAGTACAGTTATACAAGGGGGCGCCGCCTCAGGCAACCCAAAGCTCGCCTGAATCGGAGGTTAGGGACACTGCGGAACGGTCAGAGAGCTTCGAGGAGGAAAACTCGGGGAGCAGTAGCTGGAGAATTGAGGGCGGGGAAAATGGGAGAGGATCTTGTGGGCGGAGATCGGAGGAGAATGAAGAAAGTAATAATAGAAGTGAAATTACTCTCAAATTCTGA 1341 47.95 MCVMGSTTELSLECKVESYSMLLKYSFGDHHDHDQSYDKLQDFVSRLEEERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKTMEAVAAVVAPTEPILEEFMPLKNSTPAEDEKPPIITSDKANWMTSVQLWSQAGDVSKQQSESTDDHSKLQDCNNNNKDNNLETCSQRINNNGAFVPFNKDRSSGPAAKMELLEKGEKKNCSDNNCSIDGGVVMAAEQRSENGAAEVGSAPTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPTQQASGPPAAQLVVLGLGGLWVPPEYAAAAAAPPALYGPAATSHPASHFYTAPEFYARTAPAPHLQHHHHQVQLYKGAPPQATQSSPESEVRDTAERSESFEEENSGSSSWRIEGGENGRGSCGRRSEENEESNNRSEITLKF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17727351 17730590 + PI0010507.1 Cmetu02g0350 348362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0350 446 FunFam Myb family transcription factor 241 299 - -
Cmetu02g0350 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Cmetu02g0350 446 NCBIfam myb-like DNA-binding domain, SHAQKYF class 242 297 IPR006447 GO:0003677
Cmetu02g0350 446 MobiDBLite consensus disorder prediction 422 446 - -
Cmetu02g0350 446 SUPERFAMILY Homeodomain-like 239 300 IPR009057 -
Cmetu02g0350 446 MobiDBLite consensus disorder prediction 228 242 - -
Cmetu02g0350 446 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 28 414 IPR044787 GO:0003700|GO:0006355
Cmetu02g0350 446 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Cmetu02g0350 446 MobiDBLite consensus disorder prediction 224 244 - -
Cmetu02g0350 446 MobiDBLite consensus disorder prediction 365 446 - -
Cmetu02g0350 446 MobiDBLite consensus disorder prediction 135 165 - -
Cmetu02g0350 446 Gene3D - 241 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1216 Cmetu-Chr1:257954 Cmetu02g0350 Cmetu-Chr2:17727351 3.60E-33 dispersed
Cmetu02g0350 Cmetu-Chr2:17727351 Cmetu03g2101 Cmetu-Chr3:16387252 1.40E-43 dispersed
Cmetu05g0038 Cmetu-Chr5:1036085 Cmetu02g0350 Cmetu-Chr2:17727351 2.50E-84 transposed
Cmetu10g1043 Cmetu-Chr10:8766422 Cmetu02g0350 Cmetu-Chr2:17727351 4.10E-07 wgd
Cmetu02g0350 Cmetu-Chr2:17727351 Cmetu08g1522 Cmetu-Chr8:6644500 1.80E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7396 PF00249 Myb_DNA-binding 9.50E-06 CL0123 Cmetu TF