Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0400 ATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGGTCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAACAACAACAGCTTCAGATGTTCTGGTCCTTTCAACGCCAAGAAATCGAACAGGTTAACGATTTAAAAAACCATCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACCAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGTATGGTTGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCGGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACCGAGTTTACGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAAGCAATTCTTGTGTAGATGA 681 52.28 MDTNNQAQSSPYPPPQAPGPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDLKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTEFTLSRRPRRGNPCGRPLLRMVLTRVGPAAGRVILMVRAKQFLCR 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24962690 24968153 - PI0011721.2 Cmetu02g0400 348412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0400 226 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 142 - -
Cmetu02g0400 226 SUPERFAMILY Histone-fold 21 128 IPR009072 GO:0046982
Cmetu02g0400 226 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Cmetu02g0400 226 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Cmetu02g0400 226 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu02g0400 226 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0400 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0400 Cmetu-Chr2:24962690 Cmetu02g2020 Cmetu-Chr2:927508 4.00E-52 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0400 . 35 180 CCAAT-HAP5 Transcription Factor Family AT3G48590 92.6 1.2e-70 263.5
Cmetu02g2020 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.9e-53 205.7
Cmetu01g1692 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 8.4e-53 204.1
Cmetu02g2020 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 7.3e-57 217.6
Cmetu01g1692 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.3e-49 191.0
Cmetu02g0400 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.0 3.9e-42 168.7
Cmetu02g2020 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 6.0e-61 231.1
Cmetu01g1692 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.3e-52 202.6
Cmetu02g0400 . 34 180 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.8 2.1e-50 196.1
Cmetu02g0400 . 35 181 CCAAT-HAP5 Transcription Factor Family AT5G63470 82.4 1.5e-63 240.0
Cmetu02g2020 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 7.1e-50 194.5
Cmetu01g1692 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cmetu01g1692 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.4e-64 242.3
Cmetu02g2020 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 7.4e-50 194.1
Cmetu02g0400 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.0 2.2e-49 192.6
Cmetu03g0544 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 3.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7403 PF00808 CBFD_NFYB_HMF 2.30E-17 CL0012 Cmetu TF