Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0557 ATGCTGTCAAGTTCTTGCTTAAGTTTGTTAGAGTTATCATCTACGGATATGTTGGATTTTCCTCCTACACCGAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAAGACAGAGATACGGAAGTTTCCTCCTCTAAATGCCGAGGGAGAAAAATTATCGTGGCAAATTTTCTCCCTCTTCATTCTAAAAAGGATCTAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGCTTTTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCGTTAAAGGTCGATGTTGATATCCGAGAGCAAGATGAGGTTTCTCAGAAATTGCTGGAGGAATTCAACTGTGCACCGACTTTCATTCCTACATACCTTCAGAAACAATTCTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCGATTTCCCCTTATCATGGATCTCGCTTTGATCGACATCTTTGGCAAGCGTATCTTTCAGCCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATTTAGAAGAAGATTATGTCTGGATTCATGATTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATTAAGCTTGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGACGAGATTCTGAGAGCGTTACTTAATGCAGACCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTACTTGGTTTAGAATATGAATCTAAACGTGGATATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCAGTTGGAGTTCATATGGGTCGACTTGAATCTGCATTAAATCAACCACACACTTCAATCAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAAAAACTTATTCTTGGTGTTGATGACATGGACATATTTAAAGGTATTGGTCTGAAGCTATTAGCTATGGAACAGCTCTTGAACCAGCATCCAGAATTAAGGGGCAATGTCGTTCTTGTGCAAATTCTAAATCCAGCACGGAGTAATGGGAATGACGTCCAGGAAGCGAAACGGGAAACTTATGAGATCACCAAAAGGATTAACAAGGTTTTCGGTTCTCCAGGATATGAACCTGTAATCTTGATTGATCATCCCATTTCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAAGTCTTGGAAGTCTCCCCGAATTCACCTCGTACCAGCACAATTGTGGTATCGGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCGGTCAGGGTAAATCCCTGGGATTTTGATGCTGTAGCTGATGCACTTTATGCAGCTGTTTCCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACCGATATGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCGCAAGATTTGGAGCGAGCATGCCGAGAACATTACAGTAAACGTTGCTGGGGCATTGGTTTCGGTTTAGGGTTTAGAATTTTGTCCCTTTCTCCAAGTTTCAGGAAGCTTTCTATTGAACACATTGGCTCTGCCTATAGGAGTGCCTCTAGGAGGGCAATATTTTTGGATTACGACGGGACTGTGGTTTCCGAAACTTCGTTGGTTAAGTCTCCATCACCTGAAGTTCTTTCTATCATCAACAACCTTTGCATGGATTCAAAGAACACCGTTTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTTGGTGCATGGTTTGCTTCGTGTAAGAATCTAGGTATTGCTGCCGAACATGGATACTACTTGAGGTGGAAGAGGGACTGTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTGATTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACTGAGGCAACAGATGGCTCATACATAGAGACCAAAGACAGCGCATTGGTATGGCACCATCAAGATGCTGACCCTTATTTCGGTTCGTGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTTGTTGTTAAAAGAGGCCAGCAGATCGTCGAAGTTAAACCTCAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAATTCTAATAAAGCACCTGACTTTGTGCTGTGCATTGGAGATGATCGATCAGATGAAGACATGTTCGAGAGCATATCAAGCAAAAGCTATAGCTCATCCCTTGCTAGCCCCCCAAAGATATTTGCCTGTACCGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGATGTTTTGACCCTGCTTCAAAGCCTGGCCACCCCTTCTACCCGTAAACTGAGGCCAAGCATCTCCGTTACAGAACATCATCTTCTCCTTCTTCTTGATACGCTTATGCCTTCTATGGCCCTTGTTCTCCATTTCCTCTTTTCCAAGAGAATAACAGAGCAGGCGTAA 2640 42.23 MLSSSCLSLLELSSTDMLDFPPTPRTVPRVMTASGIFSDKDRDTEVSSSKCRGRKIIVANFLPLHSKKDLDSGKWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDIREQDEVSQKLLEEFNCAPTFIPTYLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLESALNQPHTSIKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLNQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGSPGYEPVILIDHPISPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDEVLEVSPNSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVSMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVLSIINNLCMDSKNTVFIVSGRGKDSLGAWFASCKNLGIAAEHGYYLRWKRDCDWEVSPLAENFDWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSKSYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSISVTEHHLLLLLDTLMPSMALVLHFLFSKRITEQA 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24165530 24169230 - PI0016238.1 Cmetu02g0557 348569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0557 879 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Cmetu02g0557 879 Gene3D Glycogen Phosphorylase B; 307 523 - -
Cmetu02g0557 879 SUPERFAMILY HAD-like 586 834 IPR036412 -
Cmetu02g0557 879 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Cmetu02g0557 879 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0003824|GO:0005992
Cmetu02g0557 879 CDD GT20_TPS 54 539 IPR001830 GO:0003824|GO:0005992
Cmetu02g0557 879 NCBIfam trehalose-phosphatase 583 834 IPR003337 GO:0003824|GO:0005992
Cmetu02g0557 879 CDD HAD_TPP 587 826 - -
Cmetu02g0557 879 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Cmetu02g0557 879 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824|GO:0005992
Cmetu02g0557 879 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Cmetu02g0557 879 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 834 IPR001830 GO:0003824|GO:0005992
Cmetu02g0557 879 Gene3D Glycogen Phosphorylase B; 46 306 - -
Cmetu02g0557 879 NCBIfam HAD-IIB family hydrolase 587 788 IPR006379 -
Cmetu02g0557 879 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 845 - -
Cmetu02g0557 879 Gene3D - 715 845 IPR023214 -
Cmetu02g0557 879 Gene3D - 585 702 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0557 K16055 - - csv:101209676 1656.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0557 Cmetu-Chr2:24165530 Cmetu04g0191 Cmetu-Chr4:1537877 0.00E+00 dispersed
Cmetu10g0261 Cmetu-Chr10:18739908 Cmetu02g0557 Cmetu-Chr2:24165530 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g717 . . Bda06g00586 . . . . . . . Cma10g00135 Cma11g00105 Car10g00127 . Sed08g0139 . Cpe04g01547 Bhi02g00424 Tan09g2229 Cmetu02g0557 . Hepe09g0190 . . Cla06g01651 Cam06g1835 Cec06g1886 Cco06g1891 Clacu06g1795 Cmu06g1737 Cre06g2555 . . . . . . . . . Blo15g00275 . . Bpe07g00827 . . . . Cmo10g00141 Cmo11g00107 . . . . . Cpe18g00836 . . . . . . . . . . . . . . Lsi06g01540 Csa01g00164 Chy02g02567 Cme02g01956
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu07g2039 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 7.3e-194 674.5
Cmetu12g0972 . 92 609 Trehalose Biosynthesis Gene Families AT1G17000 61.1 1.0e-187 654.1
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91