Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0585 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAAGGTGAAGAAGGAGTTCATGGAAGTAGTAAAGATCTTAATAAACCCTCTGTTGGTTCTTTTCCTGATTTTGACCTAAAAGAAACTCGGAGTTTTAGGTGCACGATTCCACAATCCGTGGTTGGGAGTTCTCCTTCACATGAGATTTCCAGAATGACTCCTCTTAAACCTCCAAAAATTCCTGGCGAAACGGTGACACGGCGTGCATCATTTGCTTGTTCGTCGTTTTCGAAGCCGAAATCGAGGCTAATAGAGTCTCCTTGTCCTGATGGTGCAAGTTTAGCAGAAGAAAAGGCTCTAGCAAAATCAACATTGTATAGCTCTCCTAAGGTGGACTCTCCAGCTAAGATAACCACTGTGACGAGTCCTAAAGAAGCTTTGAAGTCGACCCCGATAACTCCGAAAACGCCGTTGATTGGAACTACTGGGAATGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCTGGGAAGAGATTGAAGAAAACAGTTTTAATGGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACTATAGACAAGTTGGTGACCAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGCGTTCTTGTATTAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTGAAGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTAGTTCTTCTAGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAACGAGATTCTGAATTACGTTACACGAGCTCTTGGTGCTTCTCTAATTGGAGCAGGACTATGGCTGGTTAAAACTTTGTTGGTGAAGATACTCGCTGCTTCTTTTCAGTGCACTAGATTCTTTGATCGGATTCAAGAATCAATCTTCCATCAATATATACTACGCATCCTATCAGGACCTCCGCTCATGGAGATGGCTGAGAGGGTCGGGAGAGCGGCAAGCACAGGACAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTTATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGGGTTCAGGATTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTCGAGCAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCCGAAACGTTGCAAAACCGGGTAGCAAGTATATTGACGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGCTGAAACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTCGAACGCAAGTCATTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCTTCTGCAGTTGTACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACTACGCAAGTACTCGTCTTCATTTCATCACAGATTCTATTGGTGGTTTTCATGTTCGGTAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTTGGGGATCGTTGTGTCGTAGATGGTGTCCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATCTTCTTGAGATATGATAACGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATTAGTAACTACTACAGGAGCCCCGAAATGAGCGACTCAATTGATTTTTCTGTTGACTTTTCCACCTCAATCGAAAGCATCGGAGCTCTAAAAGCAAGAATAAAAACATACTTAGAAAGCAAACCGCAGTTCTGGCGACCGAACTACAGTGTCGTTGTGAAAGAAATCGAGAATGTCGACAAAATGAAACTATCTCTATGTGTTAATCACACCATCAACTTTCAGAACTACGGCGACAAGAGCAATCGTAGATCGGATTTGGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTCGGTATCAAGTATCATCTGTTACCTCAAGAAGTTCAGCTCAACTATGTGAGCTCAGCAGCTGGTGTGGTTCCACCCTCTCAAAGATGA 2301 41.11 MADKKGMEQLVLRILEGEEGVHGSSKDLNKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSHEISRMTPLKPPKIPGETVTRRASFACSSFSKPKSRLIESPCPDGASLAEEKALAKSTLYSSPKVDSPAKITTVTSPKEALKSTPITPKTPLIGTTGNEEEDDEEVYKTAELKVKEKSGKRLKKTVLMEWVAFLCLTGCLIASLTIDKLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLKKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRGSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGGAETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAVVLIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVDKMKLSLCVNHTINFQNYGDKSNRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYVSSAAGVVPPSQR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2471372 2474018 + PI0002153.1 Cmetu02g0585 348597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0585 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 47 753 IPR016688 -
Cmetu02g0585 766 PIRSF Memb_At2g17000 20 764 IPR016688 -
Cmetu02g0585 766 Gene3D - 595 644 IPR023408 -
Cmetu02g0585 766 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Cmetu02g0585 766 FunFam Predicted mechanosensitive ion channel 595 644 - -
Cmetu02g0585 766 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
Cmetu02g0585 766 MobiDBLite consensus disorder prediction 53 77 - -
Cmetu02g0585 766 MobiDBLite consensus disorder prediction 138 155 - -
Cmetu02g0585 766 MobiDBLite consensus disorder prediction 138 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0585 K22048 - - csv:101209209 1422.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0333 Cmetu-Chr1:4992176 Cmetu02g0585 Cmetu-Chr2:2471372 2.20E-144 dispersed
Cmetu02g0585 Cmetu-Chr2:2471372 Cmetu05g1758 Cmetu-Chr5:10161995 9.40E-170 dispersed
Cmetu02g0585 Cmetu-Chr2:2471372 Cmetu07g1894 Cmetu-Chr7:23524653 6.80E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g106 . . . . . . Bma07g00558 . . . . . . . Sed08g0905 . Cpe18g00332 Bhi02g01835 Tan09g1100 Cmetu02g0585 . Hepe09g0905 . . . . . . . . . . . Cone4ag0813 Cone7ag0765 . . . . Blo08g00359 . Bda02g00375 Bda09g01071 Bpe08g00538 . . . . . . . . . . . . . . . . . . . Cla03g01465 Cam03g1541 Cec03g1583 Cco03g1576 Clacu03g1565 Cmu03g2121 Cre03g1794 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47