Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0590 ATGGAAGAATCAGGAACCAAATCAGTGGAGTTGGATTTTGCTATGGAGGATTCCTGCAATGCCTCGCCGGAAAGTGGCGAAAGGTATAATACACCTCCTAAGGACTTTGTATGTCCCATAACTTGCAACATCTTTTATGACCCAGTGACTCTGGAGACGGGTCAAACTTACGAGCGCAGTGCAATTCAGGAATGGCTTGATAGAGGGAACTCAACTTGTCCAATCACTGGACAAAAGCTGGAAAATACCCAACTTCCCAAAACCAATTATGTGCTCAAACGCCTCATTGCGAGCTGGCTTGAAGAGAATCCCAATTTTGCTTTGGATAAACCTATTGATGAAGCTGACCCATTGGCTGTTTTGACTTCACCTGTTAGTGTCATAAGCCAAGCCTCCATTGATAGAGGCATGAAGGAGGTGAGGCGTGCAATTGTTAATCTCTATGCTTCTGAAGTTTTGGAGGAAGCAGAAGTTGCTGTGCTTTGTGTAGAGAGGTTCTGGTTGGAAGAGAATGTGGAAATGGATATACAACTTATGTTGTTGAAACCTCCCGTAATCAATGGACTTGTTGAGATCCTTGTCAATTCTGTAAATGAACAGGTTTTGAGTGCAGCAATCTTTCTTTTATCAGAGCTGGGATTCAAGGATGCTGCTGTGATTCAAACACTCTCCCGGGTCGAATCGGATGTGGATTGTATTGTGACTCTATTCAAAGGAGGTTTCATGGAGGCTGTTGTGTTGATATATCAGTTAGGACTTTCCAGCCAGAGTTTACAAGAGATGGACATGGTGGGTTCTCTTTTGAATGCTATTAAGAAGAAAGAAGGAGATGTGAATAAGATGCGTTTAAGCCATAAATCTGCTGCAGTGATTTTACTTAGAAAGATTTTGGGAAAGAGTAAAGAAGGTTCCTTGATTGCTGTTGTTGTGCTTGCTGAAAATGCAATTGAAAGTATTATAGGTAGTTTGAAAGCAAAACAGATAGAGGAGCGGATTGCTGCAGTTGGGATCTTGTTGCGATGCATTCAAGAGGACGGGAGGTGCAGAAATATCATAGCTGATAAAGCTGACTTAGCTTTGGTTTTGGAAAGTTTCGTAGAAGTGAGTAACGATGAACAATTCGAGATCATTACGTTTCTCTCTGAGTTAGTTAAGTTAAACAGGAGAACTTTTAACGAACAAATTCTTCAAAACATAAAGGATGGAGGTGAATATAGCACTATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTGTAGTGGCTGGCCTTCTGCTACAACTTGATGTCTTGGTGGAACCGCGAAAGATGAGTATCTATCGTGAAGAGGCAATGGATGCTCTTATTTCATGCCTTGGAGATTCCGACTTCCCAACTACTCAAATTTCTGCTGCTGAGACGATTATGTCTTTACAAGGAAGGTTTAGCACATCTGGACGACCCTTGACTAGGTATTTTCTTCTTGAACGTGCTGGGTTTACTAAAGGTCACAGGAAATCCATACAAAGAGATACTATTAGCAGTGCTCCGGGTGAAGTTGAACTCACAACGGAAGAAGAGAGGGCAGCTGATGAATGGGAAAGAAAGATGGCATTTGTACTTATAAGCCATGACTTTGGGTTGCTCTTTGAACCATTGGCAAAAGGTTTGAAGAGCAAATTTGCAGCGCTATTTTCAGCATGCTTTGTCTCTGCCACATGGCTCAGTCATATGCTTAGGAGTCTTCCAGACACAGGGATTTTAGAAACTGCTCGAGTTTGCTTGCTCGATCACTTCTTATCGATTTTCACAACGACAACAGATGTGGAAGAGAAAACACTTGGCTTGCTAGCAATAAACAGTTTCGTACATGAACCAGATGGACTACAGTGCCTTAGTTCCAATATGAAAGATATTATGAGATGTCTCAGGGAACTTAAGAGATCAACACCGTTGGCCTTTGAAATGCTAAAAGTTCTATGTGAGGAACGAGACTTGAGTTCTGAATTCTGGTGCCATCAAGAACTATTTCAAGTAGATTGCAGTACAAATGGAGAAGTATTATCAATTGCTTATTTCAAAGACAAGATCATCTCTGGCCATTCAGATGGAAGAATCAAGGTTTGGTCTGTTAGAGGGACTAATCTTCATCTCATACATGAAATTCAAGAGCACTCTAAGGGAGTCACCAGTCTAGCAGTTTCGGAATTCGAAGGGAAACTATACAGTGGCTCTTTAGACAAGACCATTAAGGTGCTTACACATCAATCGTTCTCTCTCACGTGCATCAAACTCACTTTAAGAACCATATTTTTTCATGAGCAGGTATGGTCTCTCGGCAGTGATACAATCCAGTGCATACAAGTTCACGACGTGAAGGATCAAATTCATAACTTAGTTGTTTCAAAGACAGTTGCTTGCTTCATCCCACATGGAGCTGGTATCAGGGTTTATTCGTGGGGTGGGGAATCGAAGTTACTAAACTCGAGTAAACATGTCAAGTGTTTGAACCTTGTGGGTGGAAAACTTTTCTGTGGATGCCATGATAGTAGCATCCAGGAGGTCGATTTGGCTACAGGCACTTTAAGTTGCATTCACAGTGGTTCCAGAAAACTGTTGGGGAAGGCCAATCCAATCCAAGCGCTTCAAGTTTACGACGAACAGTTATTTTCAGCCAGCAATGGAGCAGCTGTGAAGATTTGGAGTACATCGAACTACGGGATGATTGGATCGCTGACAACTTCAATGGATGTAAGGTCTATGGCTGTAAGTTCAGATCTAACTTACTTAGGAGGAAAAGGAGGAATGGTTGAAATCTGGAGCAGGGAAAAGCACAACAAAATCGACACACTTCAAACGGGTAGAAACTGCAAGATCGTTTGTATGACACTCGACGAAAGGGAGGAAGTTCTGGTAATCGGAACATCAGATGGTGGGATTCAGGGCTGGGGATTGTGA 2952 42.17 MEESGTKSVELDFAMEDSCNASPESGERYNTPPKDFVCPITCNIFYDPVTLETGQTYERSAIQEWLDRGNSTCPITGQKLENTQLPKTNYVLKRLIASWLEENPNFALDKPIDEADPLAVLTSPVSVISQASIDRGMKEVRRAIVNLYASEVLEEAEVAVLCVERFWLEENVEMDIQLMLLKPPVINGLVEILVNSVNEQVLSAAIFLLSELGFKDAAVIQTLSRVESDVDCIVTLFKGGFMEAVVLIYQLGLSSQSLQEMDMVGSLLNAIKKKEGDVNKMRLSHKSAAVILLRKILGKSKEGSLIAVVVLAENAIESIIGSLKAKQIEERIAAVGILLRCIQEDGRCRNIIADKADLALVLESFVEVSNDEQFEIITFLSELVKLNRRTFNEQILQNIKDGGEYSTMHSLLIYLQTARRDQSPVVAGLLLQLDVLVEPRKMSIYREEAMDALISCLGDSDFPTTQISAAETIMSLQGRFSTSGRPLTRYFLLERAGFTKGHRKSIQRDTISSAPGEVELTTEEERAADEWERKMAFVLISHDFGLLFEPLAKGLKSKFAALFSACFVSATWLSHMLRSLPDTGILETARVCLLDHFLSIFTTTTDVEEKTLGLLAINSFVHEPDGLQCLSSNMKDIMRCLRELKRSTPLAFEMLKVLCEERDLSSEFWCHQELFQVDCSTNGEVLSIAYFKDKIISGHSDGRIKVWSVRGTNLHLIHEIQEHSKGVTSLAVSEFEGKLYSGSLDKTIKVLTHQSFSLTCIKLTLRTIFFHEQVWSLGSDTIQCIQVHDVKDQIHNLVVSKTVACFIPHGAGIRVYSWGGESKLLNSSKHVKCLNLVGGKLFCGCHDSSIQEVDLATGTLSCIHSGSRKLLGKANPIQALQVYDEQLFSASNGAAVKIWSTSNYGMIGSLTTSMDVRSMAVSSDLTYLGGKGGMVEIWSREKHNKIDTLQTGRNCKIVCMTLDEREEVLVIGTSDGGIQGWGL 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14916948 14922457 - PI0026852.2 Cmetu02g0590 348602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0590 983 SUPERFAMILY ARM repeat 142 654 IPR016024 -
Cmetu02g0590 983 CDD RING-Ubox_PUB 33 85 IPR045210 -
Cmetu02g0590 983 ProSiteProfiles U-box domain profile. 31 106 IPR003613 GO:0004842|GO:0016567
Cmetu02g0590 983 Gene3D - 774 983 IPR015943 GO:0005515
Cmetu02g0590 983 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Cmetu02g0590 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 110 IPR013083 -
Cmetu02g0590 983 SUPERFAMILY RING/U-box 22 107 - -
Cmetu02g0590 983 SMART WD40_4 903 939 IPR001680 GO:0005515
Cmetu02g0590 983 SMART WD40_4 671 708 IPR001680 GO:0005515
Cmetu02g0590 983 SMART WD40_4 859 900 IPR001680 GO:0005515
Cmetu02g0590 983 SMART WD40_4 713 752 IPR001680 GO:0005515
Cmetu02g0590 983 SMART WD40_4 942 982 IPR001680 GO:0005515
Cmetu02g0590 983 SUPERFAMILY WD40 repeat-like 684 981 IPR036322 GO:0005515
Cmetu02g0590 983 SMART Ubox_2 35 99 IPR003613 GO:0004842|GO:0016567
Cmetu02g0590 983 Pfam WD domain, G-beta repeat 716 750 IPR001680 GO:0005515
Cmetu02g0590 983 Gene3D - 662 773 IPR015943 GO:0005515
Cmetu02g0590 983 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 109 - -
Cmetu02g0590 983 Gene3D - 132 494 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0590 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0590 Cmetu-Chr2:14916948 Cmetu10g1534 Cmetu-Chr10:8486681 3.70E-17 dispersed
Cmetu02g0526 Cmetu-Chr2:3908216 Cmetu02g0590 Cmetu-Chr2:14916948 4.10E-20 transposed
Cmetu04g1657 Cmetu-Chr4:29674528 Cmetu02g0590 Cmetu-Chr2:14916948 3.20E-174 transposed
Cmetu12g1909 Cmetu-Chr12:14575344 Cmetu02g0590 Cmetu-Chr2:14916948 4.60E-39 transposed
Cmetu02g0590 Cmetu-Chr2:14916948 Cmetu06g1791 Cmetu-Chr6:10247486 8.50E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008106 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 35