Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0734 ATGGCAGAGGTAAAGATTATTGGATCAGCTGCAAGCCTATTCTGCATAAGGGTCGAATGGGCCTTGAAGCTCAAAGGAATTGAGTATGAGTACATAGTTGAAGACTTGAGAAACAAAAGTGAGCTGCTTCTCAAGTCCAACCCTGTATTCAAGAAAATACCTGTGCTTTTGCACAATGACAAAGCCATCTCCGAGTCGCTTCTCATTATTGAATACATCGATGAGACGTGGAAGGAGAACCCAATATTGCCTGAAGATCCATATGACAGAGCCAATGCTCGATTCTGGGCTAAGTTTTTAGACGAGAAGGGTTTGCTCGGTGCATGGGAAGCTTGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTAGAGGCTGCAGTACAAAATTTGGCGCTGATTGACAAAGAAATACAAGGAAAGAAATTTTTGGTGGAGAGTTGGATTTGCCACTGGCTCAATGTCCTGGATGAAGTGGGAGAAATGAATGTGTTCGACAGAGAGAGGGTCCCATCCCTCCATGAATGGGCTCAAAACTTCATCCACGTTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAATTCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTTCGGTCCTTAGCCGCAAATAAGAAATAA 645 44.65 MAEVKIIGSAASLFCIRVEWALKLKGIEYEYIVEDLRNKSELLLKSNPVFKKIPVLLHNDKAISESLLIIEYIDETWKENPILPEDPYDRANARFWAKFLDEKGLLGAWEACQAEGEEKEKAVEAAVQNLALIDKEIQGKKFLVESWICHWLNVLDEVGEMNVFDRERVPSLHEWAQNFIHVPVIKESLPPREILVNYFKGSLSYVRSLAANKK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22497116 22498504 - PI0014336.1 Cmetu02g0734 348746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0734 214 SFLD Main.3: Omega- and Tau-like 1 206 IPR045073 -
Cmetu02g0734 214 SUPERFAMILY GST C-terminal domain-like 75 201 IPR036282 -
Cmetu02g0734 214 CDD GST_N_Tau 4 77 - -
Cmetu02g0734 214 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cmetu02g0734 214 CDD GST_C_Tau 87 201 IPR045074 GO:0004364|GO:0006749
Cmetu02g0734 214 Gene3D Glutaredoxin 1 82 - -
Cmetu02g0734 214 Gene3D - 83 208 - -
Cmetu02g0734 214 SFLD Glutathione Transferase (cytosolic) 1 206 IPR040079 -
Cmetu02g0734 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cmetu02g0734 214 FunFam Tau class glutathione S-transferase 1 85 - -
Cmetu02g0734 214 Pfam Glutathione S-transferase, N-terminal domain 14 75 IPR004045 -
Cmetu02g0734 214 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 193 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0734 K00799 - - csv:101217418 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0734 Cmetu-Chr2:22497116 Cmetu06g0989 Cmetu-Chr6:1942583 2.10E-50 dispersed
Cmetu02g0734 Cmetu-Chr2:22497116 Cmetu10g1222 Cmetu-Chr10:19368592 4.00E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25