Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0745 ATGAGGGCTCGGGGCTTCGCTTCCACTGGATCCGTCGCCGACCTTACTGTCATTGCCGTCTTGTTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAGGTCATCTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGTGACTGCTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACTGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAGACTCCCTAAAAACTTCACACTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAATTTGTTACTGGAGATAAAAGAAGAGTTACTCAAGCTTTGATGACTTGGAACGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACCTGTTGTGTTTCCCTCTCGTCTTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAACACAGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCCTTTTTAGCTTCAGTTGTGTCAGCTCCTGATAAATCAGGCAACAACGTTCCCTTGGTTCAGTGTACCAGCCACATGTGCCCTATTCGAGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGAGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACTCTCTGGAATTTGGTGGTGCAGCATCCCAATTTTGATAATATCACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCGTATGGTGACCTAAATGATACCGCGATGTTATGGGGAGTTAAGTTCTACAACGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTTCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAGGGTTGGGCTTTCCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTTGCGACCATCTTAGTATCTTTGGCATTACTGTTGAATTTTGCTCAATAA 1368 44.59 MRARGFASTGSVADLTVIAVLFLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVRPTKFVTGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPFLASVVSAPDKSGNNVPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAISLLATILVSLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23240357 23245675 - PI0015437.1 Cmetu02g0745 348757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0745 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0016020
Cmetu02g0745 455 PIRSF COBRA 9 455 IPR006918 GO:0010215|GO:0016020
Cmetu02g0745 455 PANTHER PROTEIN COBRA 24 444 IPR006918 GO:0010215|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0745 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0745 Cmetu-Chr2:23240357 Cmetu07g0296 Cmetu-Chr7:17544115 2.70E-217 dispersed
Cmetu02g0745 Cmetu-Chr2:23240357 Cmetu02g1379 Cmetu-Chr2:23240357 4.70E-169 tandem
Cmetu01g1752 Cmetu-Chr1:5437330 Cmetu02g0745 Cmetu-Chr2:23240357 2.20E-89 transposed
Cmetu06g2325 Cmetu-Chr6:9045917 Cmetu02g0745 Cmetu-Chr2:23240357 5.60E-132 transposed
Cmetu12g1371 Cmetu-Chr12:873268 Cmetu02g0745 Cmetu-Chr2:23240357 8.20E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0745 . 48 447 COBRA Gene Family AT5G60920 81.0 1.3e-210 729.2
Cmetu07g0296 . 44 449 COBRA Gene Family AT5G60920 75.7 1.2e-198 689.5
Cmetu07g1414 . 31 423 COBRA Gene Family AT5G60920 68.0 7.8e-179 623.6
Cmetu02g1379 . 1 380 COBRA Gene Family AT5G60920 68.0 6.2e-168 587.4
Cmetu12g1371 . 43 442 COBRA Gene Family AT5G60920 61.2 7.3e-153 537.3
Cmetu06g2325 . 23 418 COBRA Gene Family AT5G60920 52.8 3.1e-127 452.2
Cmetu07g0296 . 14 452 COBRA Gene Family AT3G02210 74.0 3.1e-205 711.4
Cmetu02g0745 . 23 451 COBRA Gene Family AT3G02210 73.9 7.7e-204 706.8
Cmetu07g1414 . 5 415 COBRA Gene Family AT3G02210 67.5 3.3e-178 621.7
Cmetu02g1379 . 3 381 COBRA Gene Family AT3G02210 68.0 3.6e-161 565.1
Cmetu12g1371 . 31 428 COBRA Gene Family AT3G02210 61.8 9.6e-154 540.4
Cmetu06g2325 . 12 402 COBRA Gene Family AT3G02210 56.3 1.2e-135 480.3
Cmetu02g0745 . 21 446 COBRA Gene Family AT3G29810 74.2 4.6e-201 697.6
Cmetu07g0296 . 29 447 COBRA Gene Family AT3G29810 72.8 4.4e-196 681.0
Cmetu07g1414 . 14 410 COBRA Gene Family AT3G29810 67.8 1.1e-175 613.2
Cmetu02g1379 . 3 363 COBRA Gene Family AT3G29810 67.0 3.7e-158 555.1
Cmetu12g1371 . 31 445 COBRA Gene Family AT3G29810 58.2 1.1e-149 526.9
Cmetu06g2325 . 4 414 COBRA Gene Family AT3G29810 55.0 4.6e-137 485.0
Cmetu07g1414 . 9 339 COBRA Gene Family AT5G15630 81.6 7.4e-175 610.1
Cmetu02g1379 . 1 291 COBRA Gene Family AT5G15630 85.6 3.0e-160 561.6
Cmetu02g0745 . 31 361 COBRA Gene Family AT5G15630 73.5 4.4e-151 531.2
Cmetu07g0296 . 29 357 COBRA Gene Family AT5G15630 69.3 9.4e-146 513.5
Cmetu12g1371 . 30 349 COBRA Gene Family AT5G15630 63.4 2.9e-131 465.3
Cmetu02g0745 . 30 224 COBRA Gene Family AT5G60950 58.7 1.1e-64 243.4
Cmetu07g0296 . 27 220 COBRA Gene Family AT5G60950 60.0 7.1e-64 240.7
Cmetu07g1414 . 27 207 COBRA Gene Family AT5G60950 56.9 3.4e-58 221.9
Cmetu12g1371 . 39 221 COBRA Gene Family AT5G60950 51.9 3.5e-47 185.3
Cmetu02g1379 . 3 159 COBRA Gene Family AT5G60950 55.4 3.3e-45 178.7
Cmetu06g2325 . 10 405 COBRA Gene Family AT1G09790 60.1 4.5e-148 521.5
Cmetu07g0296 . 25 427 COBRA Gene Family AT1G09790 54.7 4.7e-137 485.0
Cmetu02g0745 . 32 432 COBRA Gene Family AT1G09790 53.6 4.5e-132 468.4
Cmetu07g1414 . 8 410 COBRA Gene Family AT1G09790 51.2 6.1e-129 458.0
Cmetu02g1379 . 1 362 COBRA Gene Family AT1G09790 53.7 1.9e-122 436.4
Cmetu06g2109 . 34 642 COBRA Gene Family AT4G16120 67.4 3.3e-256 881.3
Cmetu04g0125 . 49 669 COBRA Gene Family AT4G16120 51.6 9.9e-200 693.7
Cmetu06g0182 . 1 562 COBRA Gene Family AT4G16120 54.0 1.9e-190 662.9
Cmetu06g2109 . 12 634 COBRA Gene Family AT3G16860 63.4 4.6e-242 834.3
Cmetu04g0125 . 43 652 COBRA Gene Family AT3G16860 50.8 7.5e-192 667.5
Cmetu06g0182 . 1 567 COBRA Gene Family AT3G16860 52.9 1.2e-181 633.6
Cmetu06g2109 . 7 629 COBRA Gene Family AT5G49270 62.3 5.2e-241 830.9
Cmetu04g0125 . 53 649 COBRA Gene Family AT5G49270 51.3 2.6e-192 669.1
Cmetu06g0182 . 1 565 COBRA Gene Family AT5G49270 51.4 9.0e-185 644.0
Cmetu04g0125 . 10 669 COBRA Gene Family AT3G20580 60.2 9.6e-251 863.2
Cmetu06g0182 . 1 568 COBRA Gene Family AT3G20580 62.1 7.6e-224 773.9
Cmetu06g2109 . 27 626 COBRA Gene Family AT3G20580 54.6 5.1e-204 708.0
Cmetu04g0125 . 5 660 COBRA Gene Family AT4G27110 57.3 2.3e-228 788.9
Cmetu06g0182 . 1 568 COBRA Gene Family AT4G27110 63.4 1.1e-222 770.0
Cmetu06g2109 . 24 644 COBRA Gene Family AT4G27110 52.3 1.3e-199 693.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73