Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0865 ATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAACATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAGCCAGAAGCTGCTTCTATTCCTTCTGATCCATTTCAAACTTATGATGCATTACATAGTCAACAGATTGATATAGAGGAACAGGCTGCTATACGTATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAAGGATTGGTTAGACTTCAAGCTCTCGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCTATAACTCTACGGTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAACAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCTGAGGGCAAAAGTAACACTAAGTCTCATTTAAAAACTACTGGCAAGAAGACAAACTTAGTAACTGACCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCATCATCCTCCACTAAGTCAGCTGGCACTGTAGAAATATCCAGTGCACAGGTTCAAAAGCTCAAGCATAAACTGGCACCTGAGAGGCCATTTGAAGACGTCAAACCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGATCAAAAATGCAAATAAGCGATTATCCTTGCCTAATAATGTTGCAGAACCTGGTAGTCAAAACCAAACAGCAAGAAATTCCGCTGGCAAAGCGACAATGACGAAGTCAATCAACGATAAACCCAAGTCAATTTCCAGATCAAGTGACACAAAATCTGCAAAACCTAAATCACATAATTGA 1308 42.28 MGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAASIPSDPFQTYDALHSQQIDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQQLENQARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTGKKTNLVTDQSNLSSQKTAASHSDGCGSSSSTKSAGTVEISSAQVQKLKHKLAPERPFEDVKPKVDTGLRSHSNPKERSTPLIKNANKRLSLPNNVAEPGSQNQTARNSAGKATMTKSINDKPKSISRSSDTKSAKPKSHN 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7898240 7906993 - PI0027101.3 Cmetu02g0865 348877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0865 435 Gene3D - 96 138 - -
Cmetu02g0865 435 MobiDBLite consensus disorder prediction 368 417 - -
Cmetu02g0865 435 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Cmetu02g0865 435 MobiDBLite consensus disorder prediction 279 338 - -
Cmetu02g0865 435 MobiDBLite consensus disorder prediction 418 435 - -
Cmetu02g0865 435 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cmetu02g0865 435 PANTHER IQ-DOMAIN 5-RELATED 1 394 - -
Cmetu02g0865 435 SMART iq_5 95 117 IPR000048 GO:0005515
Cmetu02g0865 435 SMART iq_5 118 139 IPR000048 GO:0005515
Cmetu02g0865 435 MobiDBLite consensus disorder prediction 343 367 - -
Cmetu02g0865 435 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cmetu02g0865 435 MobiDBLite consensus disorder prediction 277 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0865 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0987 Cmetu-Chr1:28703466 Cmetu02g0865 Cmetu-Chr2:7898240 1.90E-26 dispersed
Cmetu02g0865 Cmetu-Chr2:7898240 Cmetu09g0362 Cmetu-Chr9:17585457 4.70E-33 dispersed
Cmetu02g0865 Cmetu-Chr2:7898240 Cmetu07g0147 Cmetu-Chr7:23379390 1.60E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42