Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0875 ATGGCTGCCACTAACACCAATGTCTCCGGCGACGACGACGATCGGGTCTTGGCCACCGCTCAACAGATCGTTAAGAGCCTCAATACCCCTAAAGAAGTTCGTGAGGATATGCTCTTCATTCTCTCCACTTTTGATAATCGTCTTTCCAGTATTGGTACTATGATCAACAATGACGACTCCAACATCAAGAACTCTAGGTTAGACGCCGCTGAGAAGGTGATTCTACGTTGGGACCCTAATTCCGATGAGTCCAGACGGTCGTTTAATTGGGAAGATTCGCCGGACGAGGCGGCTGAATATCTATCAGCGGTGGATGATATACTCCAGTTACTAGAAGAGCTTTCAATTGGTTCTGAATCAACCGACATCGTAGATCGAGCGGAAAATTTGATCCAAATGGCAATGTGCCAGCTCGAGAGCGAATTTCGCCATATCCTAATTCAGAGCACGGTTCCTCTCGACGCCGAGCGGCTTTATGGTTCGATCCGAAGAGTTCATCTCTCATTTGCGTCTCATTACAGTGAAATTGACGACGAATTCGAGAGTTTTGGCGAGGAAAGTCGTAGTTCTGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTCGATTTAATCCATCCTGATGCGGCTGTTGATCTTTCGGAGATTGCGGATCGTATGATTCGCTCTGGCTACGAAAAGGAATGTGTTCAAGTTTATAGCATTGTTCGTCGTGATGCTTTAGATGAGTGCTTGATGATTCTTGGCGTCGAACGCCTCAGCATTGAGGAGGTTCAAAAAAGTGATTGGAAATTCTTAGATGAGAAGATGAAAAAATGGATTCAGGCTGTCAAGATTACAGTTCGGTTAATTTTGGAAGGTGAGAAGAGGCTGTATGATCAGATTTTCAATGGCGCCAATGAATCCAAGGAGGTTTGTTTTAATGAAACAGCAAAAGGGTGTGTAATGCAGTTGTTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCAGAGAAGTTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGTGTTTTGCCCGACTTGGAAGCCATGGTTTCTGATGAGTTTTTGATTAGTGAAGCACGTGGTGTATTGTGTGGACTGGGTGAAGCAGCCATAGGGACATTTGTTGAGTTTGAGAATGCCATTGAAAGCGAAAATTCGAAGAAAGCAATGCAAAACGCCGAGATTCACCCACTTGTTCGATATGTAATGAATTATGTTAGATTGTTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGTACAAGACTTGCCAAACAAGAGGGATAACGTCGATAATCTGCAATTGGAAAGTATGTCGTCGCCTTTAGCTCGTCGATTATTAATGCTATTATCGTCTTTGGAATCAAATCTTATGGAAAAATCCAAGCTCTATGAGGATGTTGCAATGCAGTTCATATTTCTAATGAACAACATACTGTACATAGTGAAAAAAGTGAAAGATTCTGAGCTTGCTCAACTGCTTGGTGATAACTGGCTTCGCAGGCATAGCGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCATTCTTAAAAGATGAAGGTATTGGTGGCAGCACAAGCAATGCCTCCAAGGTAGCATTGAAGGAAAAGTTCAAGAATTTCAATGCAAGTTTTGAGGAAATCTGTAGGATTCAAACAGCTTGGAAGGTATCAGATGCTCAACTGCGCGATGAGCTGATAATATCTGTTTCGGAGAAGGTGATTCCAGCGTATCGTTCCTTCTTAGGAAGGTTTAGAAATCAATTAGAGAGCGGAAGGCATTCGGGGAAGTACATAAAGTACACGCCAGATGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCACCTGTTGTATCACATCATTTGAGAAGAAAGGGTACTTGA 1959 42.98 MAATNTNVSGDDDDRVLATAQQIVKSLNTPKEVREDMLFILSTFDNRLSSIGTMINNDDSNIKNSRLDAAEKVILRWDPNSDESRRSFNWEDSPDEAAEYLSAVDDILQLLEELSIGSESTDIVDRAENLIQMAMCQLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASHYSEIDDEFESFGEESRSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSIVRRDALDECLMILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLYDQIFNGANESKEVCFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPDLEAMVSDEFLISEARGVLCGLGEAAIGTFVEFENAIESENSKKAMQNAEIHPLVRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNKRDNVDNLQLESMSSPLARRLLMLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSFLKDEGIGGSTSNASKVALKEKFKNFNASFEEICRIQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPDDLENSLSDLFEGSPVVSHHLRRKGT 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12661619 12663876 - PI0022589.1 Cmetu02g0875 348887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0875 652 Pfam Exo70 exocyst complex subunit 275 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmetu02g0875 652 FunFam Exocyst subunit Exo70 family protein 83 645 - -
Cmetu02g0875 652 SUPERFAMILY Cullin repeat-like 71 638 IPR016159 -
Cmetu02g0875 652 Gene3D Exocyst complex component Exo70 73 646 - -
Cmetu02g0875 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 61 639 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0875 K07195 - - csv:101205970 1200.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0875 Cmetu-Chr2:12661619 Cmetu12g0418 Cmetu-Chr12:24485433 7.20E-102 dispersed
Cmetu01g2225 Cmetu-Chr1:28032972 Cmetu02g0875 Cmetu-Chr2:12661619 2.60E-38 transposed
Cmetu12g0357 Cmetu-Chr12:3123572 Cmetu02g0875 Cmetu-Chr2:12661619 1.90E-251 transposed
Cmetu02g0875 Cmetu-Chr2:12661619 Cmetu04g0927 Cmetu-Chr4:15738148 1.50E-112 wgd
Cmetu02g0875 Cmetu-Chr2:12661619 Cmetu07g1311 Cmetu-Chr7:12206921 3.40E-120 wgd
Cmetu02g0875 Cmetu-Chr2:12661619 Cmetu09g0691 Cmetu-Chr9:8337023 2.90E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0057 . 12 634 EXO70 exocyst subunit family AT5G03540 73.6 5.9e-269 923.7
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G03540 71.4 1.5e-267 919.1
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G52340 80.1 2.0e-298 1021.5
Cmetu10g0057 . 14 634 EXO70 exocyst subunit family AT5G52340 71.1 1.0e-254 876.3
Cmetu08g1948 . 145 631 EXO70 exocyst subunit family AT5G52350 63.1 2.2e-174 609.4
Cmetu10g0057 . 134 634 EXO70 exocyst subunit family AT5G52350 60.4 5.2e-168 588.2
Cmetu12g0418 . 1 630 EXO70 exocyst subunit family AT5G58430 66.6 2.3e-246 848.6
Cmetu12g0418 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.2e-174 609.4
Cmetu07g1382 . 77 676 EXO70 exocyst subunit family AT5G13150 54.4 1.9e-174 609.8
Cmetu09g0691 . 92 703 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-191 664.8
Cmetu04g0927 . 9 597 EXO70 exocyst subunit family AT1G72470 63.9 2.6e-205 712.2
Cmetu04g0927 . 9 595 EXO70 exocyst subunit family AT1G54090 61.3 1.1e-200 696.8
Cmetu04g0927 . 9 596 EXO70 exocyst subunit family AT3G14090 62.8 2.9e-209 725.3
Cmetu02g0875 . 13 651 EXO70 exocyst subunit family AT5G50380 62.7 2.8e-229 792.0
Cmetu12g0357 . 25 663 EXO70 exocyst subunit family AT5G50380 62.6 8.9e-228 786.9
Cmetu03g1613 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 7.1e-294 1006.5
Cmetu10g1827 . 43 586 EXO70 exocyst subunit family AT3G55150 51.5 9.6e-152 534.3
Cmetu11g2447 . 35 600 EXO70 exocyst subunit family AT3G55150 50.1 1.2e-149 527.3
Cmetu10g1827 . 12 586 EXO70 exocyst subunit family AT2G39380 52.0 2.9e-156 549.3
Cmetu08g0872 . 27 632 EXO70 exocyst subunit family AT3G09520 54.6 4.5e-178 621.7
Cmetu11g2447 . 33 610 EXO70 exocyst subunit family AT5G59730 50.2 5.1e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74