Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0933 ATGGAAAAACACCATCACCTTCAACATCAGGTGCTCCTTTTCTTCCTTCTCTCAACTCCATTCATTCTTTTCCTCTCATCTCTGTTTATGTTATGCCGGAATACCAGGAAATCAAGGACCTCGATTTGGATCTCGGACCCGACGAGTCTGACCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCATTCGATATGCCTTCCGGCTCCCGAGCAATCAACTGAAACAAATTTGTGGGATAGACTTGCTAAAGCTTCAGTGTTGGATATCGAGTCGAGCTCTTTCTCGTGGGATAGGCTTTTATCTCTTCACCGCACCGAACACAGTAGTAGCACTGAACATTCGGAAGATGAGATGAATAAAGCCCTCGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCAATCAGCTTGGATATGATGATAATCTTCCAAAGGAAGCAGCTGCTGTGATAAAGATATCCTCTTCACGAATGGCCACTCAATCTGAACGCCTTGGCTATGAATTTGCCAAGTGGCTTGGGGTTCAAACTCCACAGGCCAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCGCGAGATATCGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTACTGGAAGCACTTGAATTTAGCAGATGTCTTTTCCTAATGAGCTATGTGCATGGATCTCCATTGTTAGAAAGCTCAAGTGCATTTGAATCACGAGAAATTGCTGAAAAATTAGCTGCTGCGATTGGAAGGATCTTATTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTAGCTGATCAAATGGCGTGTGCAAATATGAACACATTTGAGGAAGCCTTTGATTCTGCTATTAAGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTTAGTGGACAATAGATCAAGTTCTAATTCAGGGTTGGTTTCAGAGATCCCTGAACTTTGTGATGTTGTTGAATCCCCAAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCAGATGACACAATGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCCCGTCGACCTCCTGCTGGAAAACGTGCTAATGACCAATCAATTTACCCAAAATTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTAATCTATTACATGACATTACAGGAGGGAAATTAGGGCTCCCTTCATCAAGCGATGCCAACTCAACTTGTGGCATGCAACCCTCAGAAATGAGTTGTATTGTCCACGAATTTCGATATGGGTTTCGTGCCGCTCTTAGGGATTTGCAAGGATTTCACATATTTTTGCTTACACTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAATATCATAAATAAATTTCCCCTGGGGGAATCTGACAAAGAGGATACAGGAATTCCCGAGTCCCATTTGCAGGGTTCTGCCACTCTTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATGGATGTTACAGAGTCAGCTCCAAGAGCATCATTGTCGGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTATCACGAGATAGCTCACAAGGAAAGTTATACAAGGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTCCGGGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTTAAGAATGAAGCTGTTAAACTCTGCCAGGAGAACAAATTTAATACTGGGTTTTTTGAGGGCAGCGACAGTCATGGAGTTGTTGATGCTTACGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCATTGATATCCGAGGCTGCAAATACAGAACGGCCTTCTTCAGTTACACCTGCCTTGTTTATCGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTGTGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCGATAAGTGATGATGAAGACTCAAACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGACAGCGTCGAGAGAAAGGGTGGGAAGGTCCTAGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTGGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTTTTAAAAGCATGGAATGGTTTGAAACAGGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAACATTATTAGAATTAGATCGAAGAATACACGGTAAGGTTTCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTACATCTGCAGAAATCACATAAGAAGCTATCATCTGGGAGCGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTAAGAATCAGTCGTGGAGGAAGCGTTAGCCCAACCCAGAGGCAATCTCTTCTCATCCTGGATGAATAG 2799 43.09 MEKHHHLQHQVLLFFLLSTPFILFLSSLFMLCRNTRKSRTSIWISDPTSLTLPLSPPPLLPGYCTCWETSQQVPLTGFPNGLNSSVNVAANIALLPSTTALIHHSICLPAPEQSTETNLWDRLAKASVLDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNLPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADQMACANMNTFEEAFDSAIKRYKPKVITTLQKERRATLVDNRSSSNSGLVSEIPELCDVVESPKSSNLSVKSQISDDTMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGLPSSSDANSTCGMQPSEMSCIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDTGIPESHLQGSATLHCLSPRGKERASSDGNMDVTESAPRASLSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFIDSVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNGLKQVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25164846 25181036 + PI0001500.13 Cmetu02g0933 348945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0933 932 Gene3D Protein tyrosine phosphatase superfamily 683 851 IPR029021 -
Cmetu02g0933 932 ProSiteProfiles Dual specificity protein phosphatase domain profile. 705 850 IPR020422 GO:0006470|GO:0008138
Cmetu02g0933 932 MobiDBLite consensus disorder prediction 544 612 - -
Cmetu02g0933 932 FunFam Dual specificity protein phosphatase PHS1 677 851 - -
Cmetu02g0933 932 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 110 928 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cmetu02g0933 932 Gene3D - 284 429 IPR036940 -
Cmetu02g0933 932 CDD DSP 706 843 - -
Cmetu02g0933 932 Pfam Actin-fragmin kinase, catalytic 116 377 IPR015275 -
Cmetu02g0933 932 SMART dsp_5 705 847 IPR020422 GO:0006470|GO:0008138
Cmetu02g0933 932 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 705 849 IPR029021 -
Cmetu02g0933 932 SUPERFAMILY Protein kinase-like (PK-like) 112 443 IPR011009 -
Cmetu02g0933 932 Pfam Dual specificity phosphatase, catalytic domain 721 846 IPR000340 GO:0008138|GO:0016311
Cmetu02g0933 932 ProSitePatterns Tyrosine specific protein phosphatases active site. 792 802 IPR016130 GO:0016311|GO:0016791
Cmetu02g0933 932 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 770 826 IPR000387 GO:0016311|GO:0016791
Cmetu02g0933 932 MobiDBLite consensus disorder prediction 576 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0933 K14165 - - csv:101220184 1522.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31