Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0952 ATGGCTTCTACATCAGCCACTTCCGTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACTGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCGAAATTCATCCCCTTCCATCTTTCCTCTTCGTCTTCCCATTCTTCATGTTTTTCCCCTTCAAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGAAACTATCACCATTGACCCAAAACTCGGCAACGACGAAGGTGCGGAAGAAGAAGACGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGCTTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGTGGAGATGAAGAAGAAGAAGTGGAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGGGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTCGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCGAGGCAAGAACGCGAACCTCGAACATTCCAATCCACTTTTAGAATCTATGTGGGCAATCTTCCCTGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAGGTAGTAGATGCTCGGGTTCTTTATGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACCGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGAGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA 984 46.54 MASTSATSVFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFSPSKKKPHLPSVAQTSDWAQEDETITIDPKLGNDEGAEEEDGPHWENEELSETESRISAWEGEGEDGGSEAEVGGDEEEEVEGPYEEPNEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRQEREPRTFQSTFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24689133 24690890 + PI0011324.1 Cmetu02g0952 348964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0952 327 CDD RRM1_PSRP2_like 150 229 - -
Cmetu02g0952 327 MobiDBLite consensus disorder prediction 54 147 - -
Cmetu02g0952 327 Gene3D - 235 326 IPR012677 -
Cmetu02g0952 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 70 232 - -
Cmetu02g0952 327 MobiDBLite consensus disorder prediction 122 143 - -
Cmetu02g0952 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cmetu02g0952 327 Gene3D - 85 234 IPR012677 -
Cmetu02g0952 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 227 IPR000504 GO:0003723
Cmetu02g0952 327 MobiDBLite consensus disorder prediction 80 95 - -
Cmetu02g0952 327 SUPERFAMILY RNA-binding domain, RBD 144 236 IPR035979 GO:0003676
Cmetu02g0952 327 SMART rrm1_1 244 317 IPR000504 GO:0003723
Cmetu02g0952 327 SMART rrm1_1 150 223 IPR000504 GO:0003723
Cmetu02g0952 327 CDD RRM2_NsCP33_like 244 319 - -
Cmetu02g0952 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 233 327 - -
Cmetu02g0952 327 MobiDBLite consensus disorder prediction 105 120 - -
Cmetu02g0952 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 220 IPR000504 GO:0003723
Cmetu02g0952 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Cmetu02g0952 327 SUPERFAMILY RNA-binding domain, RBD 239 325 IPR035979 GO:0003676
Cmetu02g0952 327 PANTHER OS02G0815200 PROTEIN 31 324 - -
Cmetu02g0952 327 MobiDBLite consensus disorder prediction 54 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0952 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0952 Cmetu-Chr2:24689133 Cmetu04g3020 Cmetu-Chr4:4224096 1.80E-45 dispersed
Cmetu02g0952 Cmetu-Chr2:24689133 Cmetu01g0191 Cmetu-Chr1:26366292 1.80E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35