Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0978 ATGAGGAAAGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAATCTTCCTAAAGAAGACCAATCCATAGCGACGTTCCTAACGCAGAGTGGCACGTTTAAAGATGGTGATCTGCTTGTAAACAGAGACGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCAATTAAGCCTACAGATGATCAGTTGAGTTTAGCAGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGCGGTACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCAATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTAAAAAGGTTAAAAAATTCAAGAACCATATCTTGCTGCCCTTTACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTGAGTGCAATTATGGACAACACATATGAAGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCCCCAGAGAGAATTGTGGGAGAGGGATATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTTGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCTGAGCAAGATGGAGGGTGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTGAATTCTGTTCATTCATTTCTGCATGTGTGCAAACAGACCCAAAGAATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATAGGGATATTGACCTATCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1023 39.78 MRKGGFSNNLNLKLNLPKEDQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKRLKNSRTISCCPLHIIHRDLKPSNLLINHRGEVKITDFGVSAIMDNTYEEANTFVGTYNYMSPERIVGEGYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPEFCSFISACVQTDPKNRLSARELLEHPFIKMYEDRDIDLSSYFNDAGSPLATF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2379722 2383686 - PI0009929.1 Cmetu02g0978 348990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0978 340 SUPERFAMILY Protein kinase-like (PK-like) 55 322 IPR011009 -
Cmetu02g0978 340 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cmetu02g0978 340 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Cmetu02g0978 340 SMART serkin_6 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu02g0978 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Cmetu02g0978 340 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cmetu02g0978 340 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 320 - -
Cmetu02g0978 340 Pfam Protein kinase domain 73 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu02g0978 340 CDD PKc_MAPKK_plant_like 69 320 - -
Cmetu02g0978 340 Gene3D Transferase(Phosphotransferase) domain 1 151 336 - -
Cmetu02g0978 340 ProSiteProfiles Protein kinase domain profile. 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0978 K20603 - - csv:101204545 640.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0978 Cmetu-Chr2:2379722 Cmetu05g0779 Cmetu-Chr5:192669 2.40E-133 dispersed
Cmetu02g1844 Cmetu-Chr2:2354652 Cmetu02g0978 Cmetu-Chr2:2379722 1.20E-18 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0779 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 65.7 9.2e-125 443.7
Cmetu02g0978 . 28 338 MAP Kinase Kinase Gene Family AT4G26070 66.3 3.6e-121 431.8
Cmetu05g0766 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 2.1e-108 389.4
Cmetu02g0978 . 1 311 MAP Kinase Kinase Gene Family AT4G29810 65.1 5.7e-119 424.5
Cmetu05g0779 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.4e-117 419.9
Cmetu05g0766 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.7e-110 396.4
Cmetu04g3241 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.5 5.0e-228 787.3
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.5 5.1e-129 458.0
Cmetu12g1705 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 3.8e-84 308.9
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 67.8 6.9e-128 454.1
Cmetu12g1705 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.1e-84 309.7
Cmetu05g0766 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 6.1e-172 600.5
Cmetu05g0779 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.3 2.4e-107 386.0
Cmetu02g0978 . 7 337 MAP Kinase Kinase Gene Family AT5G56580 53.6 2.1e-103 372.9
Cmetu12g1705 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 2.4e-108 389.0
Cmetu04g0417 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 52.9 9.3e-76 280.8
Cmetu12g1705 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.3e-82 301.2
Cmetu12g1705 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.1e-113 406.8
Cmetu04g0417 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 2.9e-77 285.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70226 PF00069 Pkinase 9.10E-59 CL0016 Cmetu PK