Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0993 ATGGAATTGGATGTGAATAATGACTCCAATGACATGGATATTAAAAGAAGTATGGCGCCTGGAATGCTTTCAGCAACAGTTTGGAAGTTGAGGATGATATCTCTTATTTCAAGTTTTTCCTCAGTTTTGCTTGAAGCTACATGGGAGGTTCTGTTTGTACTCCTTGAGAATGAATGTGATTCAAAGGTATGTGGACAGATTATGTATCATCTCAGTCAAAACATCTTGTGGTCATCTTCGGAAAAAGTTCTGAACGTGATGATTGTAATGGATAACATGATTAATACAAAGGTAAATCTTAAGCTGGATTTGTCTAGCACGCTAGATGCTGCTGGTGGTTTACTTAGGAACCTTTCATCCTTGCATGGGGTTGTTAGTAAGAATGGTGGTCGAATTCCTAAGGATGCACAATTTGAGAAGAACTTGGTTCAGATTGGAAAAGTAGTAAACAGGATTGCTGAAACTGACCTTCTTGACTGGTCGGGGCGTGTTAAGCTTATTGATTGCATTTGTAACTTTATTTTAATCAGTCCAGAAATTGGTCAGACAATGATTGAAAGGTTATTTGTAATGCTGCGGGATCCTGAATATCGAGTTAGGTATTCCCTGGCGAAACAAATGGGCGTTCTCTTCCAGACATGGGATGGCCACGAGGAACTTTTCCAGGATATATGCTCCAGTTTTGGTGTTTCATTAGTGTTGTGCTCAAAACAAAAAGTTGTAACAGCAAAGGAAGTCCTAGATGCTGGTTTGGAGCTTGGTCCTATAATGGAAACCATTATTGTTACACTTGGACATCTTGCTTTGCATAGTGATGCAATGGAGTTGGAGGCTGTTTTCATGATGTGTGCAATCTCGGCCATTGATCCTAGTCAAAGGGAAATGGTCTCTGCTATGCTTGATAACCTGTCCAGAGAGCTCAATTATTCAGGAAGACAGAAGTACTTGGAGGAACTCATGGGATCACTTCTCTTTTGTTGGGTTACTTGTGATGTAAGCTTAGCTGCACTTGTTGAGATAAGGCAGCTTTTTGTCTTGGATTCTGAACCCAGTTACTTTATTCAGTATTGTTGCCACTGGCTTCTTCCTGCTATTATTTTACGTGGTGATAGTTCCAACCTTGGCTGGATTGCTAGTGTTGCTGGTGAACCAGTGGAGGCTCTAATCAGAAGCTATTTTGTGCCAATATTTTCCTTTTGTATGGCACTGCATTGCAGCAAGAGCTCTGGATATGAAAAGGGTGCTATAGTCCTTCAAAGTTCGATGTTGCGTTTTGCTAGAATAACAGAGAGCGAAAGAGATATACTTATAAAGAAACATATGGTGTCCATTATCAGCCAGATCTTAGCTTTAGCATCATGTACATCAGAACCTATGGATCCATTCTTTTCGAAGGATACTATTGTGCTTGCTGTTCGAACAGTTGTTGATGGTTTCTTGGAAATGGAGAACAGAGAAACATTAAGTGGTGTTATTGACAGAATCAATGTTTTCCGTCCAGATAGAGTATTCACGTTCATAGTAGAGATGCACTACAAAATCACTGAAGCAATTCATCACAGGCATAAATCTCATCGATTGGCATCAATTGAAGCGCTGATCAACATTCTTGGTCACAGAGCTGTTGTTTCTAGCACTTCAAACTACCTATTCAATTTGATTGGGCAATTCATTGGTGATAAGTCGTTACAAGACCAATGTTATCGCATCTTTTCAATCCTGTTGGAATCTTTTGAATCTAGTCCTGGCAAAGAAATCAGTAGAGTCCTCGGAGAACAACTTCAGTTCTTGATCACAAAGCTGGTGGCATGTTGCATCCCCTCTGAACTGATGGAGATTCTCTTGACAATAGATCATCTCACCTCATATCTTTGGTTCGCCAACTCACAGTGGATTCTGATTCATCTCTCCATGATTACATCAAAGAACTTGAGCCCTTTCCTGAGATGGATATATTTGATGATATTCGAAAATTCCATCAGGAACTATGCAGAGGTCGAGCGTTCTGGCAACCTACCGCCAAGATTACTACTATGGAGTTTAAAAGCATTGCATAAGAAGTTGATTGGGGGTCGAGTTTTTCACTCTGAGAATATCCAGAGTGTTGATTGGCACAATGATCATGAAGTGGAACTTGCAGTCTGGAAACTTATGCGAATGTGTAGTTCAGATGATACGAGTTGTATAAGGGAACTGGTGTCAGATTTTATATCTAGGGTTGGTATAGGTGACCCACACTGTGTTGTTTTCCATCTACCTGGGGACTCTAAGACCATTCACATTTTTCGCCCGGTTGTTAATGGCAATGCTTCAGAAATAGACTTCAAAATTGAAACGCAGATATCTAAAGATCTTCTGGTTGAACTTTTAAAACATTTGAAAAGGTACCTGATGGATGATTCTGTTAAAATAGTAGATATGACGTCCCAAGTTCTCCAGGCGATCCTCTCCACTGAAAAAGGTCAAAATACTCTACTCACGTTTGATTCTTATGAGAGATCACTTTTAGAGGTTCACTCGAGAGGGCTTAATATCAAGCTGGTGGATGGGTACTTGTTGGATCTTGAAAGGAGATTTAAAGCTGAGGCTGTTTCAGTGGAAAGTTCCACCGTGTGGGAGACCAATGGTAAAACCTTTGAGAAGTGGATTTGTCCGTTAGTATACTCACTAATTGGACACTCAAATGATGTGATTCTAAGATTATGTCTAGATATTGTGTTGCTAAAAGCTGAGATTGCCGAGCTGCTTTTACCCACTGTAATTGTCAATCTAGCTGGAAGAAAGGATTTGGATATTGATCTTCAAAAATTAATTTCACTGCAGGTGCAAGAACACATATTTGTAGAATCAAACAAGTTGATCAAGTCAATTCAAGTACTTCTGAATACCCTCAATGAACTTCGGCTATATCATGTCATGGAGCGATCTTTTGTATCTTTGAGGAAAGATAATTCTAAGCCTTCTAAGGGATCAAGTAAGAGTTCTAGATCCCGTTCCACCTCTATTAATTGTAGAGATCCAGTGGCTGCATCTAATTCTTCTGTGATGCCACCAATCTCCTGGGACAAAGTTTATTGGCTTTCTATTGACTACCTTATTGTTGCTAAAGCTGCAATTTATTCTGGTTCATACTTTACATCTGTCATGTACGTTGAGCATTGGTGTGAAGAGCATTTTGGATGCCTTTCCCTGGGGACCCCAGATTTTTCTTTCGTGGAAACAATGCCACGTCATATTGAAATACTTGTCTCAGCAGTCACTCGAATTAATGAACCCGACAGCTTGTATGGAATTATACGTTCTCACAAGTTGACGTCACAAATCATCACCTTTGAGCATGAGGGAAATTGGAGCAAGGCCCTTGAATACTATGACTTGCGAGTACGATCGGATTCCCTGGTTCAAGAGGGTGGTGTTATTAAAAGTATTTATATGGATAAGCAGCCACAATGTCATCAGTCAATTTCTACCTTGGAAGATGTCTCAGGACACTGGAAACCTTACAAGGGGGTTATTAGATCTCTGCAGAAAATTGGTTGTGCACACGTTCTGGATTTATATTGCCAAGGTTTAACATTTCGGGACGACCATGTTCAGCATGATTTAGAGTTCATGGAACTGCAGTATGAAGCTGCCTGGCGTGCAGGAAACTGGGATTTCTCTTTGCTATATGCAGGACCTGATTCTGGTTCATCAAGTTATCAGACCAAGAATATTCATTTCAACGAAAACCTGCACAGTTGTTTGCGGGCATTGCAAGAAGGAGACTTCGATGAATTTTATAGAAAGTTCAAAGATTCAAAGCGGGAGTTAGTGTGGTCCATAACTCATGCAAGTGAAGAAAGCACCGAATATATATATTCAACTATAATTAAGCTTCAGATCTTTTATCATCTTGGCTTGGCTTGGGGATTACGTTGGGCGGATTCTGAATATTCAACTTTTTTTCATGGGAATCCAAAAGTGTTATCAGATTATGTGATTCCCACAATGGACCAGTTATCTTTGCTGAATTCTGATTGGAGCTGCATTCTGAAAAGTACTCAGCTACATATGGATTTACTAGAACCTTTTATAGCATTTCGTCGAGTTCTACTTCAGGTTTTGAGAAGTAAGGAATGTATGGTGCAACATCTTTTGCAATCTGCTTCCACCCTTCGCAAGGGATCTAGATATTCTCAAGCAGCTGCCGCCGTACATGAGTTCAAGTCTCTCTGTCTTCAAGAAGCGGAAGAGAACACGCCATTGTATTGGCTTGGAAGGCTTGAAGAAGCAAAGCTGTTGCGTGCCCAAGGTCGGCACTCAATGGCAATTAGCCTTGCAGAACATGTTTCACAATACTTCCAATCCAGTGAGGAAGCTTCAGACGTATTACGCTTGGTTGGGAAGTGGCTAGCTGAAACTAGATCGAGCAATTCAAGAACTATTCTGGAGAAGTACCTAAAACCAGCAGTATCTCTTGCTGAGGGTCAGGAGTTCCTTAATAAGAAATCACTTGAGAGACAGAGCCAAACTCATTTTCATCTTGCACATTATGCCGATGCTTTGTTTAGGAGTTATGAGGAAAGACTCAACTCTAATGAATGGCAAGCAGCAATGCATTTGAGGAAGCATAAGACAATGGAGTTGGATGCTCTCATTAGACGTCTAAAAAGTTCAACAAAGGGCGAGAAGACTGACTTTACAGTGAAAATACAAGAATTACAAAAGCAACTTTCCATGGACAGGGAAGAGGCTGAAAAATTGCAGGATGACCGAGACAATTTTCTCGGCCTAGCATTAGAAGGATATAAACGATGCTTGGAGGTTGGTGACAAATATGACATGAGAGTGGTGTTTCGACTAGTTTCATTGTGGTTCAGCCTTTCTTCTAGGCCAAATGTCATAAACAACATGCGGAGCACAATTACTGAGGTTCAGTCGTACAAATTTATACCTCTGGTTTACCAAATTGCTTCAAGAATGGGCTGCGCAAAGGATGGTCAAGGACCAAACAATTTTCAGGTAGCCTTGGTTTCTCTCGTGAAAAAAATGGCTATAGACCATCCATACCACACTATATTTCAGCTTCTTGCCCTGGCAAATGGTGATCGTGTCAAAGATAAACAACGCAGCAGAAACTCATTTATTGTGGATATGGACAAAAAGTTTGCTGCAGAGTATCTATTAAAGGAGTTGTCATCCAACCATGGTGCTTTGATTAGACAAGTCAAGCAAATGGTAGAAATCTATATCAAGCTTGCAGAACTGGAGACAAGGAGAGAGGATACTAATAAAAGGATGATGCTTCCAAGAGAACTGCGTAGTCTTCAGCCATTGGAACTTGTACCTGTGGTGACGGCTACCTTTCCAGTTGACCGAAGTTGTCAATATCAGGAAGGTTCCTTCCCATATTTCAAAGGCTTAGGTGATACAGTAAGGATTATGAATGGCATAAATGCTCCAAAAGTTATTGAATGTGAAGGTTCTGATGGCCACAGATACCGACAGCTTGCAAAATCAGGAAATGATGATTTGCGACAAGATGCTGTTATGGAACAATTTTTTGGATTAGTCAACACGTTTCTCCAAAACTATCAGGATGCGAAAAGGCGGAGATTAGGAATACGGACATACAAGGTCGTTCCCTTTACTCCAAGTGCTGGTGTTCTTGAATGGGTTGATGGAACTATTCCTCTTGGAGAATATCTTATAGGAAGCACCAGAAATGGAGGAGCACATGGTCGCTACAGAATAGGAGATTGGTCATTTCTTGAATGCAGAGATTACATGGCAAAAGAAAAGGACAAGCGTAAAGCATTCCAAGAAGTTTCTGAGAATTTCAGGCCCGTCATGCATTACTTTTTCTTGGAGAGATTCTTACAACCAGCTGATTGGTTTGAGAAGAGGCTTGCTTACACTCGAAGTGTAGCTGCTAGTTCAATGGTTGGTTATATTGTTGGCTTAGGAGATCGACATTCCATGAATATTCTAATCGATCAAGCTACGGCTGAGGTTGTTCACATTGATCTGGGAGTTGCCTTTGAACAAGGCCTGATGCTTAAGACACCTGAGCGGGTTCCGTTCAGACTTACGAGAGATGTGATTGATGGCATGGGTGTTACTGGGGTGGAAGGGGTTTTCAGAAGATGTTGCGAGGAAACTCTCTCTGTTATGCGGACAAATAAAGAGGCGCTGCTAACCATTGTTGAAGTTTTCATCCATGATCCCCTGTACAAATGGGCTTTATCCCCTCTGAAGGCGTTGCAGCGTCAAAAGGAAACCGATGATGACTTGGAGACTAGTCTCGAAGGCTCAGAAGACGAATATGAAGGGAATAAGGATGCTGCACGTGCACTGTTGCGAGTCAAACAAAACTAG 6360 40.99 MELDVNNDSNDMDIKRSMAPGMLSATVWKLRMISLISSFSSVLLEATWEVLFVLLENECDSKVCGQIMYHLSQNILWSSSEKVLNVMIVMDNMINTKVNLKLDLSSTLDAAGGLLRNLSSLHGVVSKNGGRIPKDAQFEKNLVQIGKVVNRIAETDLLDWSGRVKLIDCICNFILISPEIGQTMIERLFVMLRDPEYRVRYSLAKQMGVLFQTWDGHEELFQDICSSFGVSLVLCSKQKVVTAKEVLDAGLELGPIMETIIVTLGHLALHSDAMELEAVFMMCAISAIDPSQREMVSAMLDNLSRELNYSGRQKYLEELMGSLLFCWVTCDVSLAALVEIRQLFVLDSEPSYFIQYCCHWLLPAIILRGDSSNLGWIASVAGEPVEALIRSYFVPIFSFCMALHCSKSSGYEKGAIVLQSSMLRFARITESERDILIKKHMVSIISQILALASCTSEPMDPFFSKDTIVLAVRTVVDGFLEMENRETLSGVIDRINVFRPDRVFTFIVEMHYKITEAIHHRHKSHRLASIEALINILGHRAVVSSTSNYLFNLIGQFIGDKSLQDQCYRIFSILLESFESSPGKEISRVLGEQLQFLITKLVACCIPSELMEILLTIDHLTSYLWFANSQWILIHLSMITSKNLSPFLRWIYLMIFENSIRNYAEVERSGNLPPRLLLWSLKALHKKLIGGRVFHSENIQSVDWHNDHEVELAVWKLMRMCSSDDTSCIRELVSDFISRVGIGDPHCVVFHLPGDSKTIHIFRPVVNGNASEIDFKIETQISKDLLVELLKHLKRYLMDDSVKIVDMTSQVLQAILSTEKGQNTLLTFDSYERSLLEVHSRGLNIKLVDGYLLDLERRFKAEAVSVESSTVWETNGKTFEKWICPLVYSLIGHSNDVILRLCLDIVLLKAEIAELLLPTVIVNLAGRKDLDIDLQKLISLQVQEHIFVESNKLIKSIQVLLNTLNELRLYHVMERSFVSLRKDNSKPSKGSSKSSRSRSTSINCRDPVAASNSSVMPPISWDKVYWLSIDYLIVAKAAIYSGSYFTSVMYVEHWCEEHFGCLSLGTPDFSFVETMPRHIEILVSAVTRINEPDSLYGIIRSHKLTSQIITFEHEGNWSKALEYYDLRVRSDSLVQEGGVIKSIYMDKQPQCHQSISTLEDVSGHWKPYKGVIRSLQKIGCAHVLDLYCQGLTFRDDHVQHDLEFMELQYEAAWRAGNWDFSLLYAGPDSGSSSYQTKNIHFNENLHSCLRALQEGDFDEFYRKFKDSKRELVWSITHASEESTEYIYSTIIKLQIFYHLGLAWGLRWADSEYSTFFHGNPKVLSDYVIPTMDQLSLLNSDWSCILKSTQLHMDLLEPFIAFRRVLLQVLRSKECMVQHLLQSASTLRKGSRYSQAAAAVHEFKSLCLQEAEENTPLYWLGRLEEAKLLRAQGRHSMAISLAEHVSQYFQSSEEASDVLRLVGKWLAETRSSNSRTILEKYLKPAVSLAEGQEFLNKKSLERQSQTHFHLAHYADALFRSYEERLNSNEWQAAMHLRKHKTMELDALIRRLKSSTKGEKTDFTVKIQELQKQLSMDREEAEKLQDDRDNFLGLALEGYKRCLEVGDKYDMRVVFRLVSLWFSLSSRPNVINNMRSTITEVQSYKFIPLVYQIASRMGCAKDGQGPNNFQVALVSLVKKMAIDHPYHTIFQLLALANGDRVKDKQRSRNSFIVDMDKKFAAEYLLKELSSNHGALIRQVKQMVEIYIKLAELETRREDTNKRMMLPRELRSLQPLELVPVVTATFPVDRSCQYQEGSFPYFKGLGDTVRIMNGINAPKVIECEGSDGHRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLQNYQDAKRRRLGIRTYKVVPFTPSAGVLEWVDGTIPLGEYLIGSTRNGGAHGRYRIGDWSFLECRDYMAKEKDKRKAFQEVSENFRPVMHYFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDVIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEGSEDEYEGNKDAARALLRVKQN 2119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24284891 24326831 - PI0026527.1 Cmetu02g0993 349005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0993 2119 ProSiteProfiles FAT domain profile. 1033 1696 IPR014009 -
Cmetu02g0993 2119 Coils Coil 1565 1585 - -
Cmetu02g0993 2119 Gene3D - 1933 2108 IPR036940 -
Cmetu02g0993 2119 SUPERFAMILY Protein kinase-like (PK-like) 1733 2086 IPR011009 -
Cmetu02g0993 2119 Coils Coil 2113 2119 - -
Cmetu02g0993 2119 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 1832 1847 IPR018936 GO:0016301
Cmetu02g0993 2119 CDD PIKKc_ATM 1799 2076 IPR044107 GO:0004674|GO:0006281|GO:0006974
Cmetu02g0993 2119 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1802 2114 IPR000403 -
Cmetu02g0993 2119 Pfam Phosphatidylinositol 3- and 4-kinase 1835 2075 IPR000403 -
Cmetu02g0993 2119 Coils Coil 1740 1760 - -
Cmetu02g0993 2119 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1969 1989 IPR018936 GO:0016301
Cmetu02g0993 2119 MobiDBLite consensus disorder prediction 990 1005 - -
Cmetu02g0993 2119 SUPERFAMILY ARM repeat 163 623 IPR016024 -
Cmetu02g0993 2119 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 2118 IPR038980 GO:0004674|GO:0006974
Cmetu02g0993 2119 FunFam Serine/threonine-protein kinase ATM 1728 1887 - -
Cmetu02g0993 2119 Coils Coil 2082 2102 - -
Cmetu02g0993 2119 MobiDBLite consensus disorder prediction 982 1005 - -
Cmetu02g0993 2119 FunFam Serine/threonine-protein kinase ATM 1933 2119 - -
Cmetu02g0993 2119 SMART pi3k_hr1_6 1829 2119 IPR000403 -
Cmetu02g0993 2119 MobiDBLite consensus disorder prediction 2087 2107 - -
Cmetu02g0993 2119 Gene3D - 1725 1887 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0993 K04728 - - csv:101208785 3894.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0717 Cmetu-Chr1:4999417 Cmetu02g0993 Cmetu-Chr2:24284891 2.70E-78 dispersed
Cmetu02g0993 Cmetu-Chr2:24284891 Cmetu11g2136 Cmetu-Chr11:26931531 6.20E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g743 . . . . . . . . . . . . . . Sed12g2440 . Cpe04g01556 Bhi02g00449 Tan09g2251 Cmetu02g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01554 . . Cme02g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002889 1 3 3 2 1 1 5 2 1 2 1 1 1 1 2 2 1 1 4 1 1 1 2 3 3 3 1 1 2 1 54