Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1086 ATGGCTGCTCGAGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACCAGTGTAGTAATAGTTTCAATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGATATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTTCTTGCACTTCTGCTATATCCGTTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGGTTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCTGCTCAGAGAGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTTAGGTTAAAGGCTGTTCCAACGGATTGCAGTGAATGCCCCATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTTGATCTCAGTGCTCTGTCCAATCTTCGTTCCGATACTGATAGACCATCTGCAAGTGTTGTTACGGCAAACCGTTATGTGGGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAAGGTCTGCTTCGACCTGTTCGCACTGAAAACACTGATGCACACGGTGATTTAGGGCCTGCTAGTCCTTTAGAAGCTGCTGAGAATGGGTCTGCACATGACCAAACCATACCAGAACGGTCTCCTGTAAGACTGATGTCTTTGAGTCAGTCCACATCACAACTCTAG 1134 46.03 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANRYVGSQPSSQSYLVRLQGLLRPVRTENTDAHGDLGPASPLEAAENGSAHDQTIPERSPVRLMSLSQSTSQL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24222799 24228786 + PI0016980.1 Cmetu02g1086 349098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1086 377 Pfam Ring finger domain 234 276 IPR001841 -
Cmetu02g1086 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cmetu02g1086 377 SMART ring_2 235 275 IPR001841 -
Cmetu02g1086 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 356 IPR044793 GO:0004842|GO:0010182
Cmetu02g1086 377 MobiDBLite consensus disorder prediction 332 377 - -
Cmetu02g1086 377 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cmetu02g1086 377 SUPERFAMILY RING/U-box 216 284 - -
Cmetu02g1086 377 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1086 K16284 - - csv:101208939 766.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1086 Cmetu-Chr2:24222799 Cmetu06g2226 Cmetu-Chr6:24069424 2.40E-09 dispersed
Cmetu12g1918 Cmetu-Chr12:2398499 Cmetu02g1086 Cmetu-Chr2:24222799 3.90E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.4e-76 281.2
Cmetu02g1813 . 1 305 C3H Transcription Factor Family AT1G11020 75.0 2.1e-134 475.7
Cmetu04g1459 . 62 220 C3H Transcription Factor Family AT1G50440 75.6 1.0e-66 250.4
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G08750 61.2 3.6e-119 425.2
Cmetu05g1652 . 1 428 C3H Transcription Factor Family AT3G16090 71.3 5.3e-166 581.3
Cmetu03g1808 . 31 185 C3H Transcription Factor Family AT1G22510 65.8 3.2e-56 215.3
Cmetu09g1076 . 1 225 C3H Transcription Factor Family AT5G38895 58.4 1.2e-73 273.9
Cmetu08g0953 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.3e-71 265.8
Cmetu03g0100 . 2 163 C3H Transcription Factor Family AT1G19310 62.0 1.3e-50 196.8
Cmetu03g1808 . 35 185 C3H Transcription Factor Family AT1G72175 67.5 1.9e-53 205.7
Cmetu04g0973 . 9 177 C3H Transcription Factor Family AT5G48655 51.1 3.2e-40 162.2
Cmetu08g1384 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 4.6e-159 557.8
Cmetu03g1881 . 6 162 C3H Transcription Factor Family AT5G07040 61.7 9.8e-45 176.8
Cmetu02g0736 . 1 395 C3H Transcription Factor Family AT1G18470 73.7 1.1e-172 603.2
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu01g2657 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 2.4e-95 345.9
Cmetu01g0145 . 46 273 C3H Transcription Factor Family AT5G55970 67.7 1.1e-90 330.5
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G63780 57.6 5.4e-115 411.4
Cmetu04g3121 . 1 424 C3H Transcription Factor Family AT3G58030 53.7 3.4e-108 389.0
Cmetu01g2657 . 35 345 C3H Transcription Factor Family AT4G26580 62.5 2.7e-113 405.6
Cmetu01g0145 . 39 336 C3H Transcription Factor Family AT4G26580 61.6 1.8e-109 392.9
Cmetu09g1280 . 20 173 C3H Transcription Factor Family AT4G10150 50.6 4.0e-42 168.7
Cmetu08g0660 . 1 471 C3H Transcription Factor Family AT5G01960 69.1 1.9e-167 585.9
Cmetu10g1321 . 1 463 C3H Transcription Factor Family AT5G01960 59.3 2.9e-152 535.4
Cmetu11g0663 . 1 156 C3H Transcription Factor Family AT2G04240 58.6 5.0e-44 174.5
Cmetu01g2423 . 1 149 C3H Transcription Factor Family AT2G04240 57.1 1.4e-38 156.4
Cmetu05g0470 . 66 275 C3H Transcription Factor Family AT5G19430 54.9 8.0e-57 217.6
Cmetu07g1879 . 130 585 C3H Transcription Factor Family AT5G45290 51.8 2.1e-102 370.2
Cmetu05g0470 . 73 275 C3H Transcription Factor Family AT5G12310 64.8 2.5e-58 222.6
Cmetu02g1872 . 71 364 C3H Transcription Factor Family AT5G05810 53.5 2.5e-76 283.1
Cmetu03g1225 . 58 216 C3H Transcription Factor Family AT5G05830 67.3 1.8e-59 226.1
Cmetu08g1884 . 70 220 C3H Transcription Factor Family AT5G05830 59.6 7.1e-48 187.6
Cmetu08g0797 . 12 151 C3H Transcription Factor Family AT5G05830 58.6 6.5e-41 164.5
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 5.9e-75 277.7
Cmetu03g1911 . 1 235 C3H Transcription Factor Family AT3G55530 80.9 7.2e-96 347.4
Cmetu01g1181 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 5.2e-118 421.0
Cmetu06g0468 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 7.7e-120 427.6
Cmetu07g0726 . 3 314 C3H Transcription Factor Family AT5G20910 58.7 1.2e-99 360.1
Cmetu05g1652 . 119 419 C3H Transcription Factor Family AT1G65040 68.0 6.6e-109 391.0
Cmetu08g0953 . 17 227 C3H Transcription Factor Family AT2G23780 62.3 1.4e-73 273.1
Cmetu03g0100 . 2 165 C3H Transcription Factor Family AT2G23780 53.5 1.3e-42 170.2
Cmetu04g1536 . 1 318 C3H Transcription Factor Family AT3G10810 54.2 1.9e-78 290.4
Cmetu09g1080 . 1 170 C3H Transcription Factor Family AT1G63840 58.0 4.4e-48 188.0
Cmetu11g2005 . 1 152 C3H Transcription Factor Family AT1G63840 51.6 4.4e-40 161.4
Cmetu09g0427 . 1 354 C3H Transcription Factor Family AT1G68070 62.3 1.1e-117 420.2
Cmetu06g0430 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.4e-85 313.5
Cmetu07g2272 . 4 181 C3H Transcription Factor Family AT1G76410 56.1 1.6e-51 199.5
Cmetu06g0558 . 6 154 C3H Transcription Factor Family AT1G76410 55.9 3.3e-44 175.3
Cmetu03g0748 . 1 397 C3H Transcription Factor Family AT1G80400 54.7 2.5e-113 406.0
Cmetu06g0558 . 13 145 C3H Transcription Factor Family AT2G17450 57.8 4.6e-38 154.8
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu08g1631 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 3.5e-53 205.3
Cmetu04g1794 . 11 158 C3H Transcription Factor Family AT2G35910 55.2 1.1e-43 173.7
Cmetu06g1281 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.6e-128 454.9
Cmetu05g1224 . 35 324 C3H Transcription Factor Family AT2G41980 74.5 4.7e-128 454.5
Cmetu06g0293 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.7e-128 454.5
Cmetu10g1619 . 47 304 C3H Transcription Factor Family AT2G41980 79.8 1.1e-126 449.9
Cmetu09g0559 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.2e-125 445.7
Cmetu11g0718 . 43 273 C3H Transcription Factor Family AT2G41980 62.5 2.4e-92 335.9
Cmetu06g2606 . 126 400 C3H Transcription Factor Family AT3G06140 62.0 6.8e-94 341.3
Cmetu04g1396 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 6.4e-86 314.7
Cmetu02g1086 . 58 366 C3H Transcription Factor Family AT3G47990 69.6 5.1e-127 451.1
Cmetu12g1918 . 64 204 C3H Transcription Factor Family AT3G47990 61.8 9.5e-49 191.0
Cmetu07g2272 . 4 185 C3H Transcription Factor Family AT1G20823 57.3 4.2e-53 204.9
Cmetu06g0558 . 13 154 C3H Transcription Factor Family AT1G20823 58.9 2.4e-45 179.1
Cmetu11g0764 . 40 411 C3H Transcription Factor Family AT3G18930 53.8 3.3e-84 309.3
Cmetu06g2558 . 20 235 C3H Transcription Factor Family AT5G66070 73.1 2.2e-74 275.8
Cmetu08g1127 . 3 272 C3H Transcription Factor Family AT5G02750 53.0 1.6e-66 250.0
Cmetu02g0736 . 5 473 C3H Transcription Factor Family AT1G73950 71.9 2.4e-194 675.2
Cmetu09g1280 . 1 160 C3H Transcription Factor Family AT1G33480 51.9 3.1e-40 162.5
Cmetu09g0427 . 15 252 C3H Transcription Factor Family AT2G01735 61.3 4.2e-74 275.0
Cmetu06g0430 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 1.0e-51 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61