Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1238 ATGGCGCTGTTCAGACGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAATTACAGAGTCACTTTCCTGATGCGTCATTCATGTTTTCAACTTCAGAGAAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAAGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTTCTTTAAATCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCCGATTGGCCTCCATCAGATACACCTCTAATTTTGGATCGTTTAATACTAAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTATTTACGGTCAAGATCCCTCAGCGCCAGCCAATAGAACTTCAAAGCTTTTATTTTCGACACCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGACGAAGATCTAGTACACGAGGAGATGATGTTTCGAGTCATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCGGTATCCCAAGGACTTCAGAGTTGAGTTAACCCAAAATTTCACTTATGTCAGCGCTTTTTTTGATGCTGATGCTGTTGTCCCCCGTCTCACCACATCCTTTGATGATGAAGATGGAAATGAAAACTGGAGCTGCTCTCTCCTGAAGAATTTTTTGAGCAAAGGATCCAATGATCCTCACATTGGAAGGAGGACTTCGATCCTCCTGCATTCCAAACTGTGCTGCTCTGACGATGGAAATCTTAAGCATGATAAAAAATCTGATTTTGATGCAGTGAAGGACATCACTGTGGATGATGTGAAGTACAAACTGGATGAAGATATATATTCTGATCTTAATGCAGTTAAGGACATTGCCGTGGATGATGGGGAAATGAATTCGAATTCCTTCTTGGTAGCTACTAATGTACCGACTCATGTGAAAGTCCAGGGTTGGTGGATGATGCATACGAGAAATTTGAAGATGTGGAAGAAAAGGATGATGGAAGAGATACTTCACCCGAGAAATTGGAAAACAAAGTTCTGCAAAGAAAAAAATTGCAAACACCGATTTCCCAAGAAACAGCCTGTTTCAAAAAGTCAAACAACAAGAACTCAAGGTTTCTCTGCAAAACAAGCGAAGCCAAATGCAGTTTCTAGATGGATCCCTCCTAACAAAGGCTCTTATACGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCGAAGGATGTAAATGCAAATTCCAAAACAAAGGCCGCTGCCACCTTTGATTCTCTGGTTTCTACAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATTCTGTGAGGCCTTCTCACTCCGCACCTGGGAACCTCATGCATGGCCCATCATCTCCAGTTGATACCACCACGCGCCCCCCCCGTGCCCACAAAGCCTCCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCACCCCTTCATTTCCACTTTCTGTGTCTTTAGCACCACCCCCATTCTTAACTCACCAAAGGCAAATAGTGTTTTGCCCCATTCTTCAACACAACCATCATGGGAAAATATATTCTTCTGTTGATACTGGTACGGTGACTGGTTCTATACCTCCACCCCTACCTTCCTCTCACTTATTCCGCCACCTCCCCGCCACCTCCGCCTATTATTTTCAGGGCATGGTGCTTCTCCAGCCCTACTACCACCCCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCATTAATGCATGATGCATTTCCTTCACCATCTCTAATGAAAAAAGCACCACCACCCCCCCCACCACCTCCGCCCCCACCCATGCATGGTGCATCTCCAATACTATCTTTATTACATGGAGCTCCATCTTCACGCTTAAAGCCTCACCTCCGCCACTCCTCCCCCCCACCACCTTCCATGCATAGAGCTCCACCTCCACCACCTCCTCCCCCCACCACCTTCCATGCATGTAGCTCCACCTCCACCACCTCCTCCCCTCCTCCCCCCACACCTTCCATGCATGTAGCTCCACCTCCACCACCTCCTCCCCCCCCCCTTCCACCAAATGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTATCACGCTCGACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTTTGCAAGGAAGCTTGTGGGAAGAACTACAAAGATACGGCGAGCCTCAAATTGCACCAGAGTTTGACGTCTCCGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGAAAAATCTGGAGGCCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGACGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACCAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTCGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAATTTGGCTCTCAGAATTTAAGAAGAGTTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAGTTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGAATACGTTCTGCAGTTGGCTTCAAGTTGGATAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTTCTTGCTTCGAAGACACCGGCTCTTCTAAGTTTTCATTTGGACCTGGGTAGCCTCGAGGCAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATCAAGGGGTTGGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGGCATCGGTCACGAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTTGTGAGACTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCCGAATTGGAAAAGAAAAAGGCCGTGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAAAAGAGTGTGAAATAG 3699 45.34 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMFSTSEKMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSSLNPQPSQLRYLQYISRRNLGSDWPPSDTPLILDRLILRVLPLFDGGKGCRPVVRIYGQDPSAPANRTSKLLFSTPIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDARDRYPKDFRVELTQNFTYVSAFFDADAVVPRLTTSFDDEDGNENWSCSLLKNFLSKGSNDPHIGRRTSILLHSKLCCSDDGNLKHDKKSDFDAVKDITVDDVKYKLDEDIYSDLNAVKDIAVDDGEMNSNSFLVATNVPTHVKVQGWWMMHTRNLKMWKKRMMEEILHPRNWKTKFCKEKNCKHRFPKKQPVSKSQTTRTQGFSAKQAKPNAVSRWIPPNKGSYTNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKAAATFDSLVSTDVFTERKNYKVDSVRPSHSAPGNLMHGPSSPVDTTTRPPRAHKASSTSSTSSTSSTTPSFPLSVSLAPPPFLTHQRQIVFCPILQHNHHGKIYSSVDTGTVTGSIPPPLPSSHLFRHLPATSAYYFQGMVLLQPYYHPTPTPTPTPTPTPLMHDAFPSPSLMKKAPPPPPPPPPPPMHGASPILSLLHGAPSSRLKPHLRHSSPPPPSMHRAPPPPPPPPTTFHACSSTSTTSSPPPPTPSMHVAPPPPPPPPPLPPNAPPDPRGLSSGRGRGLSRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPAEKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQNLRRVLNTVNSACDEVRNSTKLKEIMKKILYLGIRSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLSFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSETLKEFIAIAETEVASVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAVKEAEMENAKGISLTKKSVK 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23565422 23579157 + PI0022888.1 Cmetu02g1238 349250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 473 515 - -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 699 847 - -
Cmetu02g1238 1232 Gene3D - 169 303 - -
Cmetu02g1238 1232 PANTHER FORMIN-J 762 1224 - -
Cmetu02g1238 1232 SMART PTEN_C2_2 164 302 IPR014020 -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 587 620 - -
Cmetu02g1238 1232 SMART it6_source 835 1230 IPR015425 -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 792 822 - -
Cmetu02g1238 1232 Gene3D Protein tyrosine phosphatase superfamily 8 158 IPR029021 -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 570 620 - -
Cmetu02g1238 1232 Gene3D Formin, FH2 domain 834 1206 IPR042201 -
Cmetu02g1238 1232 ProSiteProfiles Formin homology-2 (FH2) domain profile. 836 1220 IPR015425 -
Cmetu02g1238 1232 ProSiteProfiles C2 tensin-type domain profile. 166 305 IPR014020 -
Cmetu02g1238 1232 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 154 IPR029021 -
Cmetu02g1238 1232 Coils Coil 1105 1125 - -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 759 782 - -
Cmetu02g1238 1232 Coils Coil 1195 1224 - -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 720 739 - -
Cmetu02g1238 1232 Pfam Formin Homology 2 Domain 841 1194 IPR015425 -
Cmetu02g1238 1232 Pfam C2 domain of PTEN tumour-suppressor protein 166 301 IPR014020 -
Cmetu02g1238 1232 MobiDBLite consensus disorder prediction 479 496 - -
Cmetu02g1238 1232 SUPERFAMILY Formin homology 2 domain (FH2 domain) 849 1212 - -
Cmetu02g1238 1232 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 301 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1238 K28090 - - gmx:100779085 1181.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1238 Cmetu-Chr2:23565422 Cmetu07g0822 Cmetu-Chr7:23966090 2.40E-244 dispersed
Cmetu12g0477 Cmetu-Chr12:569021 Cmetu02g1238 Cmetu-Chr2:23565422 7.70E-273 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1209 . 465 941 FH2 protein (formin) Gene Family AT3G25500 65.8 1.1e-163 574.7
Cmetu11g1138 . 413 838 FH2 protein (formin) Gene Family AT3G25500 53.9 3.5e-122 436.8
Cmetu02g0328 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.5 6.8e-102 369.4
Cmetu04g2000 . 624 833 FH2 protein (formin) Gene Family AT2G43800 64.8 3.0e-66 250.8
Cmetu11g1515 . 320 621 FH2 protein (formin) Gene Family AT4G15200 56.5 2.0e-53 207.2
Cmetu11g1515 . 475 938 FH2 protein (formin) Gene Family AT5G54650 63.9 2.5e-161 566.6
Cmetu11g1138 . 33 857 FH2 protein (formin) Gene Family AT5G67470 53.9 1.1e-212 737.3
Cmetu10g1209 . 503 937 FH2 protein (formin) Gene Family AT5G67470 61.0 3.1e-127 453.4
Cmetu02g0328 . 500 895 FH2 protein (formin) Gene Family AT5G67470 51.1 5.6e-105 379.4
Cmetu04g2000 . 611 825 FH2 protein (formin) Gene Family AT5G67470 61.5 5.7e-65 246.5
Cmetu10g0982 . 338 830 FH2 protein (formin) Gene Family AT1G59910 51.4 6.6e-125 445.7
Cmetu04g2000 . 651 833 FH2 protein (formin) Gene Family AT5G48360 54.1 1.3e-46 185.3
Cmetu04g2000 . 623 825 FH2 protein (formin) Gene Family AT3G07540 50.2 7.7e-48 189.5
Cmetu04g2809 . 942 1253 FH2 protein (formin) Gene Family AT1G42980 51.4 7.4e-70 261.2
Cmetu04g2809 . 1 1260 FH2 protein (formin) Gene Family AT1G31810 68.4 0.0e+00 1203.7
Cmetu02g1238 . 915 1222 FH2 protein (formin) Gene Family AT5G07650 70.8 8.1e-116 415.2
Cmetu07g0822 . 1067 1389 FH2 protein (formin) Gene Family AT5G07650 64.7 3.5e-111 399.8
Cmetu04g2809 . 926 1257 FH2 protein (formin) Gene Family AT5G07650 59.9 1.3e-108 391.3
Cmetu02g1753 . 919 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 2.4e-104 377.1
Cmetu12g0477 . 984 1241 FH2 protein (formin) Gene Family AT5G07650 71.7 1.6e-100 364.4
Cmetu02g1238 . 842 1215 FH2 protein (formin) Gene Family AT5G07770 65.3 4.9e-126 448.7
Cmetu07g0822 . 992 1381 FH2 protein (formin) Gene Family AT5G07770 59.3 6.9e-120 428.3
Cmetu04g2809 . 862 1251 FH2 protein (formin) Gene Family AT5G07770 56.0 2.1e-116 416.8
Cmetu02g1753 . 842 1223 FH2 protein (formin) Gene Family AT5G07770 56.7 4.0e-112 402.5
Cmetu12g0477 . 907 1245 FH2 protein (formin) Gene Family AT5G07770 63.5 7.6e-111 398.3
Cmetu07g0822 . 966 1392 FH2 protein (formin) Gene Family AT3G32400 73.1 8.0e-170 594.0
Cmetu02g1753 . 849 1232 FH2 protein (formin) Gene Family AT3G32400 67.7 1.4e-142 503.4
Cmetu04g2809 . 862 1256 FH2 protein (formin) Gene Family AT3G32400 66.0 1.6e-141 500.0
Cmetu02g1238 . 842 1222 FH2 protein (formin) Gene Family AT3G32400 64.0 7.3e-131 464.5
Cmetu12g0477 . 877 1241 FH2 protein (formin) Gene Family AT3G32400 57.1 1.9e-110 396.7
Cmetu07g0822 . 1 1392 FH2 protein (formin) Gene Family AT2G25050 52.3 0.0e+00 1171.0
Cmetu02g1238 . 843 1222 FH2 protein (formin) Gene Family AT5G07780 60.0 3.0e-110 396.0
Cmetu07g0822 . 993 1382 FH2 protein (formin) Gene Family AT5G07780 54.6 5.8e-106 381.7
Cmetu04g2809 . 863 1252 FH2 protein (formin) Gene Family AT5G07780 52.7 4.6e-103 372.1
Cmetu12g0477 . 908 1240 FH2 protein (formin) Gene Family AT5G07780 57.3 9.0e-99 357.8
Cmetu02g1753 . 849 1223 FH2 protein (formin) Gene Family AT5G07780 52.8 2.5e-96 349.7
Cmetu02g1238 . 914 1229 FH2 protein (formin) Gene Family AT5G07760 70.2 3.7e-114 409.8
Cmetu07g0822 . 1066 1389 FH2 protein (formin) Gene Family AT5G07760 66.2 2.3e-111 400.6
Cmetu04g2809 . 936 1257 FH2 protein (formin) Gene Family AT5G07760 61.3 9.8e-107 385.2
Cmetu02g1753 . 918 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 3.2e-105 380.2
Cmetu12g0477 . 983 1241 FH2 protein (formin) Gene Family AT5G07760 72.2 1.4e-100 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82