Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1260 ATGTTGAGAAATAATTCAAAAGATCAAAAGGGGTGTGAAGCAAAAGAAGAAGGAATATTAATTAGAAGTAGTAGTAATAATAATAATGATGGAAAATATAGTTTCCCAAAGGCTCCAACAAGTAGTTCAAGACAATGGTCAGGATTCAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTCAAACTTGGCCAACCTAGTAAAGTCATCGATTGGCTTCTCGACGTCACCAAACTCGACATCGACAACCTCCCCCCGCTCCAAATCCCCCCCGGTTTCTCTCCGTTCCACCAACAAATGCTCTTCCCTCAATACGTCGATCCTCATCATCATTATTACACTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCCCGATTTTGTAATTCCCTACCTCCTTCGTTTATGCTCGATGTGAAGAGTACTGATGCGTATCAGACGACAATGACGGTAGAAAAAACGAAGCTTTGGGATATGGATTTAGCAGTATTACAAGAAAAAGCAGGATCAGCGACGACCGCAACGACGACGACGAAAGGGAAGTGGATTGATGGAAGTAATAACAATAGTAATAGTACTCAACAAGTAGAAGATTACAATGAGCAAATTTCATCTCAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTACCCAACATGATGAACAATAATAATTCCACTCCTTACAATAATTACAACTCTTCTCATGATCATCATCATCAACAACAACCTTCTTGTTTATCACTTTCGTCACAATTTGGGAACAATAACAATAGTAATGGAGTTTTTCCATCACAATTAGTTGAGGCTGCTCAAGCAAGTACTTCATCATCTTCAAGTTCTTCACTATTTTTCACTCCTTACGCTTCATATATTACCAATCCATTTGAAAGTCATATCCATTTCTTGAGCTCAAATTCTCATGCTTTGTCCAATCCCTTCATGTCTTCATCTCTCCATCCTTTTGCCTCACAAAACTTAAAACCCTTTCCACCTCCAAGTTTCAATCTCAAGCAGCTTTTTCATGCAGCTGACACCAATGCTGGTGGCGGCGCCGGTGTTGGCTCCTCCTTAAAAGATGGGGCGGCCGGGAACTCGTAG 1215 39.67 MLRNNSKDQKGCEAKEEGILIRSSSNNNNDGKYSFPKAPTSSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLQIPPGFSPFHQQMLFPQYVDPHHHYYTSSSSSSSSSSSRFCNSLPPSFMLDVKSTDAYQTTMTVEKTKLWDMDLAVLQEKAGSATTATTTTKGKWIDGSNNNSNSTQQVEDYNEQISSQKLLSMAICSSNLPNMMNNNNSTPYNNYNSSHDHHHQQQPSCLSLSSQFGNNNNSNGVFPSQLVEAAQASTSSSSSSSLFFTPYASYITNPFESHIHFLSSNSHALSNPFMSSSLHPFASQNLKPFPPPSFNLKQLFHAADTNAGGGAGVGSSLKDGAAGNS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23298965 23301076 - PI0010033.2 Cmetu02g1260 349272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1260 404 ProSiteProfiles TCP domain profile. 63 121 IPR017887 -
Cmetu02g1260 404 MobiDBLite consensus disorder prediction 1 47 - -
Cmetu02g1260 404 MobiDBLite consensus disorder prediction 20 47 - -
Cmetu02g1260 404 MobiDBLite consensus disorder prediction 1 17 - -
Cmetu02g1260 404 Pfam TCP family transcription factor 63 223 IPR017887 -
Cmetu02g1260 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 319 IPR005333 GO:0003700
Cmetu02g1260 404 MobiDBLite consensus disorder prediction 262 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1260 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1260 Cmetu-Chr2:23298965 Cmetu07g0568 Cmetu-Chr7:18008292 2.20E-32 dispersed
Cmetu12g1931 Cmetu-Chr12:806059 Cmetu02g1260 Cmetu-Chr2:23298965 3.80E-20 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7452 PF03634 TCP 6.10E-22 No_clan Cmetu TF