Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1264 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGAACTCCTCTTCAGTATTAAAAGAAGTGCTTTGGACTCTCCTTTCACGTCTAAGCTCTTCCCACACCATCCTCAACCTGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAGCCAGGGAGGTGTAGGAGAACTGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATATTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACATAAACAACCTCTCAAATCCAACATTTTCTTCCTTAAACAGCAACTCATCCTTACTCTCCTATCGCTCTTTCCCTGCTCATCAAATATCTTCAACTCCAAATAATGGGAATGGCATGCCAACCAAAGACACCAATACCCTCTTGCTTCTTGAACCTGGTTCTTACTCCGACAAAAACCCAGATTACAGAAGTAGGTACACTTATGGGCCAAAAGAGGAAGTGGATGAGAAAGTTTTCTTCTCACAAGAACCGTCTGAAGCTACTGGGAGAGCTGATTTCTCTGCTTCATCCATAGCTAGTTCACTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAACAACAGCTCCTCTTTGCAGAGTGATCAATCCTCATTTTATCAGCTTCATCAAAGCCTCACAGAACCTTTGAAGCAACAAAAGAGAGACGAATCGCAGAAGACTGTTCATCGATTCTTTGATGAATGGCCTCCAAAAGACAGAGGATCGTGGCTTGATTTCGCTGATAAATCATCGAATACTAGCTCAGTTTCTACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCCTAG 1005 42.99 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKRSALDSPFTSKLFPHHPQPVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINNLSNPTFSSLNSNSSLLSYRSFPAHQISSTPNNGNGMPTKDTNTLLLLEPGSYSDKNPDYRSRYTYGPKEEVDEKVFFSQEPSEATGRADFSASSIASSLQLTPLTMSCSSLYPKQNNSSSLQSDQSSFYQLHQSLTEPLKQQKRDESQKTVHRFFDEWPPKDRGSWLDFADKSSNTSSVSTTRLSISIPTASNDFPIFRSKNP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2529126 2531078 - PI0023045.1 Cmetu02g1264 349276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1264 334 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmetu02g1264 334 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cmetu02g1264 334 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmetu02g1264 334 PANTHER GROWTH-REGULATING FACTOR 5 7 325 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmetu02g1264 334 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmetu02g1264 334 Pfam WRC 77 118 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1264 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1264 Cmetu-Chr2:2529126 Cmetu03g0320 Cmetu-Chr3:849189 4.40E-31 dispersed
Cmetu04g0675 Cmetu-Chr4:4937951 Cmetu02g1264 Cmetu-Chr2:2529126 1.20E-30 transposed
Cmetu04g2587 Cmetu-Chr4:14431815 Cmetu02g1264 Cmetu-Chr2:2529126 1.20E-52 transposed
Cmetu11g1252 Cmetu-Chr11:25047880 Cmetu02g1264 Cmetu-Chr2:2529126 8.70E-43 transposed
Cmetu02g1264 Cmetu-Chr2:2529126 Cmetu05g1875 Cmetu-Chr5:125054 3.70E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2587 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 1.9e-49 193.7
Cmetu05g1875 . 3 113 GRF Transcription Factor Family AT3G13960 71.2 7.8e-43 171.8
Cmetu02g1264 . 8 110 GRF Transcription Factor Family AT3G13960 73.8 3.0e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7453 PF08879 WRC 1.10E-20 No_clan Cmetu TF