Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1294 ATGGCGAACGTACCAACTGCTGGCGGAATATCAAAGATTTTGTCCAATCCATCACCGGACTCCCCCTCCGATGTCTCTGACGTTGTGGTTCAGGTCATCGATCTCAAGGCGACGGGAAACCGCTATATGTTTACTGCTAACGATGGCGACATGAAGCTTAAAGCTATTCTTCCATCAAATCTGACTTCTGACGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCGAACAAGTCAGAAAAGTATTTAATCGTGACAAAATGTGAGGTGGTTTCTCCTGCTCTAGATAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCAGGTATTATTTTGAAACCGAAGGTAGAGCTCGACGATAAGAGCACATTTAACAATGGATCTGGTATTCTTCTGAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTATGAATATGGCACCAGCCGCCCGGATGTCCATGACAAGGCGAGTTCAGCCCCTTGTCTACTTGAACCCTTACCTTGGAGATTGGACCATCAAAGTTCGTGTTACTGATAAGGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACAATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAGTTTTCCCTCGGCAAAGTCTATTACGTTTCGAGGGGAACTTTGAAAGTTGCCAATAAGAAATTTAAAACAGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGATGAGGTCAGCAACGAAGCTGCTTTTGTTCCTGAAACAAAATATAATTTGTCAAGATTGATATATGTAATTGGAGTTGTTCAAAATGTTTCTTCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAAACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCAACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATTGCAGTGAAATATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACAATAAGCAGGAGCTCAATTACAATAAACCCAGACATAAAGGAAGCACATGATTTGAGATCATGGTATGACTCTGAAGGTAAAGCCGTATCCATGTCTTCTGTAAGCTCCGGCCTGAGCCCATCAACCAAGAGTGGTTCTAGGTCCATGTATTCTGACCGGATTTCCTTATCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCACGTTCTTCAGCATTAGAGCATATGTCAGCTTTATCAAACCCGATCAAACAATGTGGTATCGTGCTTGCAAAACATGCAACAAGAAGGTGACTGAAGCCATCGGATCTGGATATTGGTGCGACAATTGCCAGAAAAATGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTATCCGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGAATTATTGGATGCTCTGCTGATGAACTTGATCAGCTAAAATCGCAGATTGGTGAGGAGAATTCATATCAACTTAAACTCAAAGAAGCCACATGGGTTCCCCACTTATTTCGAGTTAGCGTTTCGCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCGGTTGCTCCGGTTGATTTTGCTGCTGAATCCAGATTTTTGCTAGAAGAGATAGCAAAAATTAAAGCTTCCTAA 1836 41.18 MANVPTAGGISKILSNPSPDSPSDVSDVVVQVIDLKATGNRYMFTANDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKSEKYLIVTKCEVVSPALDKEVKTEVKKEEAGIILKPKVELDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNLSRLIYVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILQNKSLGEEKPTFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKIKAS 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23327773 23331301 - PI0000479.1 Cmetu02g1294 349306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1294 611 CDD RPA1_DBD_C 443 607 IPR047192 -
Cmetu02g1294 611 Gene3D - 286 419 IPR012340 -
Cmetu02g1294 611 NCBIfam replication factor-a protein 1 (rpa1) 6 607 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmetu02g1294 611 PANTHER REPLICATION FACTOR A 1, RFA1 190 571 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmetu02g1294 611 MobiDBLite consensus disorder prediction 9 25 - -
Cmetu02g1294 611 SUPERFAMILY Nucleic acid-binding proteins 181 286 IPR012340 -
Cmetu02g1294 611 Pfam Replication factor-A C terminal domain 455 601 IPR013955 -
Cmetu02g1294 611 CDD RPA1_DBD_B 300 406 - -
Cmetu02g1294 611 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Cmetu02g1294 611 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Cmetu02g1294 611 FunFam Replication protein A subunit 287 416 - -
Cmetu02g1294 611 FunFam Replication protein A subunit 421 608 - -
Cmetu02g1294 611 FunFam Replication protein A subunit 4 114 - -
Cmetu02g1294 611 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmetu02g1294 611 Gene3D - 420 608 IPR012340 -
Cmetu02g1294 611 Coils Coil 526 546 - -
Cmetu02g1294 611 SUPERFAMILY Nucleic acid-binding proteins 434 607 IPR012340 -
Cmetu02g1294 611 FunFam Replication protein A subunit 176 285 - -
Cmetu02g1294 611 CDD RPA1_DBD_A 179 282 - -
Cmetu02g1294 611 Pfam Replication protein A OB domain 299 392 IPR031657 -
Cmetu02g1294 611 Gene3D - 6 112 IPR012340 -
Cmetu02g1294 611 Gene3D - 176 285 IPR012340 -
Cmetu02g1294 611 MobiDBLite consensus disorder prediction 1 25 - -
Cmetu02g1294 611 SUPERFAMILY Nucleic acid-binding proteins 297 412 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1294 K07466 - - csv:101208545 1109.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1294 Cmetu-Chr2:23327773 Cmetu05g1912 Cmetu-Chr5:147750 2.90E-73 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1973 . 106 796 Core DNA Replication Machinery Family AT4G14700 66.8 7.2e-269 923.7
Cmetu09g1273 . 105 608 Core DNA Replication Machinery Family AT4G14700 59.5 4.8e-172 602.1
Cmetu02g0756 . 91 494 Core DNA Replication Machinery Family AT4G14700 68.4 4.1e-163 572.4
Cmetu09g1323 . 106 266 Core DNA Replication Machinery Family AT4G14700 65.9 2.1e-58 224.6
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G14700 73.7 1.9e-51 201.4
Cmetu09g1973 . 72 796 Core DNA Replication Machinery Family AT4G12620 67.1 1.0e-278 956.4
Cmetu09g1273 . 71 608 Core DNA Replication Machinery Family AT4G12620 60.0 4.8e-180 628.6
Cmetu02g0756 . 89 494 Core DNA Replication Machinery Family AT4G12620 68.7 1.1e-163 574.3
Cmetu09g1323 . 72 266 Core DNA Replication Machinery Family AT4G12620 61.8 1.5e-64 245.0
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G12620 73.7 7.2e-51 199.5
Cmetu03g0945 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 2.7e-140 495.4
Cmetu10g0487 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.0 1.6e-131 466.5
Cmetu11g0818 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.7 4.8e-179 624.8
Cmetu05g1262 . 1 283 Core DNA Replication Machinery Family AT1G26840 64.0 3.8e-92 335.1
Cmetu01g1941 . 4 800 Core DNA Replication Machinery Family AT1G79150 59.6 1.1e-245 846.7
Cmetu04g0809 . 1 952 Core DNA Replication Machinery Family AT1G44900 72.9 0.0e+00 1307.4
Cmetu04g1329 . 1 554 Core DNA Replication Machinery Family AT5G46280 77.1 3.1e-250 861.3
Cmetu01g1320 . 1 844 Core DNA Replication Machinery Family AT2G16440 76.1 0.0e+00 1151.0
Cmetu05g1624 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1113.6
Cmetu04g3110 . 68 896 Core DNA Replication Machinery Family AT5G44635 72.6 0.0e+00 1192.6
Cmetu01g2697 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.0 0.0e+00 1217.6
Cmetu11g1143 . 12 504 Core DNA Replication Machinery Family AT2G29680 59.4 5.7e-163 571.2
Cmetu11g1143 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 8.2e-140 494.2
Cmetu01g0268 . 1 592 Core DNA Replication Machinery Family AT3G25100 76.5 3.2e-258 887.9
Cmetu04g2866 . 12 770 Core DNA Replication Machinery Family AT3G09660 72.7 4.0e-314 1073.5
Cmetu01g0077 . 10 645 Core DNA Replication Machinery Family AT2G14050 77.7 6.5e-289 989.9
Cmetu11g2130 . 1 404 Core DNA Replication Machinery Family AT2G20980 56.3 2.5e-118 422.5
Cmetu01g2696 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.8 7.9e-76 280.4
Cmetu07g0908 . 44 188 Core DNA Replication Machinery Family AT3G12530 72.4 1.6e-60 229.2
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 3.9e-69 258.1
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 3.9e-69 258.1
Cmetu06g0031 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 2.4e-50 195.7
Cmetu11g1317 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1779.2
Cmetu12g1528 . 104 726 Core DNA Replication Machinery Family AT1G67630 61.8 1.7e-217 752.7
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g0829 . 10 364 Core DNA Replication Machinery Family AT5G41880 63.3 8.9e-144 507.3
Cmetu08g0422 . 1 1048 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1686.0
Cmetu04g0761 . 1 444 Core DNA Replication Machinery Family AT2G42120 75.0 4.9e-203 704.1
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g1681 . 1 125 Core DNA Replication Machinery Family AT1G09815 60.8 2.6e-37 151.8
Cmetu11g2291 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2935.6
Cmetu09g1641 . 7 710 Core DNA Replication Machinery Family AT1G08260 76.1 0.0e+00 1131.7
Cmetu11g2291 . 25 2208 Core DNA Replication Machinery Family AT2G27120 67.1 0.0e+00 2906.3
Cmetu09g1641 . 29 710 Core DNA Replication Machinery Family AT2G27120 74.6 0.0e+00 1082.0
Cmetu09g1641 . 722 1215 Core DNA Replication Machinery Family AT2G27120 51.6 8.0e-134 476.5
Cmetu12g1449 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 1.1e-121 434.1
Cmetu12g0662 . 7 218 Core DNA Replication Machinery Family AT5G22110 58.2 1.2e-56 218.0
Cmetu05g0121 . 1 927 Core DNA Replication Machinery Family AT5G22010 63.2 5.9e-304 1040.4
Cmetu06g1240 . 1 334 Core DNA Replication Machinery Family AT1G63160 91.0 6.1e-174 607.1
Cmetu08g0376 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 3.0e-179 624.8
Cmetu07g2093 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.7e-153 538.5
Cmetu03g1930 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.6e-154 542.7
Cmetu05g1912 . 26 590 Core DNA Replication Machinery Family AT2G06510 66.3 3.4e-234 808.1
Cmetu06g1804 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-198 689.9
Cmetu02g1294 . 1 611 Core DNA Replication Machinery Family AT5G08020 66.7 7.1e-237 817.0
Cmetu06g1804 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.2 1.0e-233 807.0
Cmetu02g1294 . 6 606 Core DNA Replication Machinery Family AT5G61000 65.3 7.1e-232 800.4
Cmetu06g1804 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.8 6.4e-230 794.3
Cmetu02g0333 . 1 225 Core DNA Replication Machinery Family AT3G02920 50.2 1.4e-55 213.4
Cmetu02g1464 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.4e-188 656.0
Cmetu06g2653 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.1e-301 1033.1
Cmetu07g2177 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 4.1e-115 411.4
Cmetu11g1276 . 1 805 Core DNA Replication Machinery Family AT1G08130 65.6 9.7e-295 1009.6
Cmetu11g1276 . 205 805 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007473 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36