Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1340 ATGGAGAATATTATGATGGTTGATGATGCTTTGGGAGACTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGATGCAGAGGATTTGGAGAGGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAGAGAGAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCGAAGCAGACGTCCGACCAGGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTTAAATATATGTTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTCGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAGGAAAAAGTTAAATTTGACAAGAATGGACCGGCTGCTATAGCCAAGTATGAAGCAGAATGTCTTGCCAAAGGAGAGGCAGATGGAAATGGAAATGGTAATTCCCAGAGCGTTCTTCAAGACCTTCAGGATGCAACACTTGGGTCTCTTTTGTCTTCTTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTATCCTTTAGAAAAAGGGGTTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAACTTGGGCTATCCCATGGCAATAGTCCTCCTTATAAGAAGCCTCATGATTTGAAGAAGATGTGGAAAGTAGGAGTTTTAACAGCTGTAATAAAGCATATGTCACCCGACATTGCAAAGATAAGGAGACACGTACGGCAGTCGAAGTGCTTACAAGACAAAATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCAAGTAGTGATAATGGAGCTTCTGGAATAACGGAGACACCAGTAGGTGGTCGTGGAGAAAAACAAGCTGCAGCAAGTAGTGAAAGTGACTATGATGTTGATCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGAGGATAGGAGACCTCGATCCGTGGAGGTGGAGCCATCCAGTAATCTACACAATAATTCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAACAGAGAAAAAGGCATCGTGGTGGCAGGATAAAGCCTGCCAACCAAACACTGGCTCCCTCTCAGAACGCAGAAGAACCAAGTGTTGAACCAAGAAATACTCAGCTCGATATTAACCATTCTAATGTACCCCTAGATAGATTTGAAATTCCAGGAAACCAACAACAACAGGGTATTGCCACAGCTTTGAGGCCACTGGAGAAGGACTTGGATGTCCAATCAGAAGTACCAGCTCCCCAGTTGTTCAACATGTTCTCCGCACCGTCGTCCGATAATATCAATATAATTTCCACTCAGAGCATGTTTGTTGATGGAAGGCCTTTGTTGTATCCTGTTATGCAGAATTCTGAGATGCAGCATGAAAATGCTTACAATATTTATAACCCATCAGTGGAATATAGATCCAATTTTGATGTGCAGCATTCTCAATTTGTAAATGAGCCTCAATTGAGATTGGAGGAAGGAGTACATATTCCATCACAACATAGAAACACTGAGACGATAGGAGGAGAATTCAACTATGTAAAAGAAACGTTCAATGCCGAACAAGATAGGCCTGTTGATCCACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGAGCATTTAACAGCCCGTTCCATCTTGGAATCGATGGTGCAAGCTCATTCGATGACTTTTTGGTTGACGATGATTTGATTCAATACTTCGGAGCATAA 1809 42.95 MENIMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIDAEDLERRMWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGEKQAAASSESDYDVDLADDGVGSVSSKEDRRPRSVEVEPSSNLHNNSQPAEGKEQGEKQRKRHRGGRIKPANQTLAPSQNAEEPSVEPRNTQLDINHSNVPLDRFEIPGNQQQQGIATALRPLEKDLDVQSEVPAPQLFNMFSAPSSDNINIISTQSMFVDGRPLLYPVMQNSEMQHENAYNIYNPSVEYRSNFDVQHSQFVNEPQLRLEEGVHIPSQHRNTETIGGEFNYVKETFNAEQDRPVDPQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGA 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4350386 4352996 + PI0009385.1 Cmetu02g1340 349352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1340 602 MobiDBLite consensus disorder prediction 62 85 - -
Cmetu02g1340 602 MobiDBLite consensus disorder prediction 383 404 - -
Cmetu02g1340 602 MobiDBLite consensus disorder prediction 333 348 - -
Cmetu02g1340 602 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Cmetu02g1340 602 Coils Coil 39 59 - -
Cmetu02g1340 602 FunFam Ethylene insensitive 3-like 1 161 297 - -
Cmetu02g1340 602 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 6 580 IPR006957 GO:0003700|GO:0005634
Cmetu02g1340 602 FunFam Ethylene insensitive 3-like 1 74 152 - -
Cmetu02g1340 602 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
Cmetu02g1340 602 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Cmetu02g1340 602 Pfam Ethylene insensitive 3 40 287 IPR047091 GO:0003700
Cmetu02g1340 602 MobiDBLite consensus disorder prediction 289 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1340 K14514 - - csv:101210347 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1340 Cmetu-Chr2:4350386 Cmetu03g0331 Cmetu-Chr3:8062848 8.10E-100 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1832 . 2 626 EIL Transcription Factor Family AT2G27050 58.9 5.1e-192 667.9
Cmetu03g0331 . 8 507 EIL Transcription Factor Family AT2G27050 62.5 5.5e-170 594.7
Cmetu02g1340 . 44 350 EIL Transcription Factor Family AT2G27050 57.4 9.0e-96 348.2
Cmetu02g1340 . 44 577 EIL Transcription Factor Family AT1G73730 54.5 3.7e-147 518.8
Cmetu02g1832 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.7e-105 378.3
Cmetu03g0331 . 38 335 EIL Transcription Factor Family AT1G73730 61.6 8.5e-104 374.8
Cmetu02g1832 . 3 626 EIL Transcription Factor Family AT3G20770 62.3 2.9e-209 725.3
Cmetu03g0331 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 3.7e-172 602.1
Cmetu02g1340 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cmetu02g1340 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.7e-70 262.7
Cmetu07g0535 . 23 330 EIL Transcription Factor Family AT5G10120 52.9 2.9e-84 309.7
Cmetu02g1340 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.6e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7458 PF04873 EIN3 4.10E-127 No_clan Cmetu TF