Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1365 ATGGCACACGAAACGACGCCGCTTAGAATAGCCACACTCACAACCTCAAACACCACCTGCCTGGCCGCCCATAACGGCCTCCTCTACTCCGGCGCTACCAACCAAATCGCCGTCTTCGATTTAACCAACGACTTCACTCAAATCGACACTCTTCGCATAAACGACGCTGCTTCGGGGTCCGTTAAATCCATCGCATTTGGGCCTTGGAAAATCTACACGGCCCATCAGGACTGCAAGATCAGAGTATGGAAGATCACGCGCTCGGGACCGCTACGTCACCGTCTTATGGCTACTCTCCCCACCGTTAAAGACCGGCTGTACCGGATAATTTCGCCGGGGAATTACGTACGTGTACGGCGCCACCGTAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTTAATGGGGGATTTGTGTACTCGGTTTCATGGGATCGGAGTTTTAAGAACGGCGTCGTTTATACTGGCTCTGCTGATGGGGTTATTGGAGTTTGGGAGGTTAAGGAGGGGAAGAAGAAGAAGAAGAAGTATACGTTGGTTAGGACTTTGGACAACCACAAATCCACGGTAAACGCGATCGCACTAAACGAGGGAGGTTGGGCAATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTATGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGGGCTGTATTATGCTTGTATACTCTTCGAGATTTGTTAGTTAGTGGGTCGGAAGATAGGACGCTCAGGATTTGGAGAGGTAATGTCACAAATGGTTACCACTGTACGACTGTGATGGATGGACACAGGTCGCCGGTGAAGTCGTGGTTTTGGTTTCCGTCGAAGCTGGCGAACGGAGTTTGA 894 50.67 MAHETTPLRIATLTTSNTTCLAAHNGLLYSGATNQIAVFDLTNDFTQIDTLRINDAASGSVKSIAFGPWKIYTAHQDCKIRVWKITRSGPLRHRLMATLPTVKDRLYRIISPGNYVRVRRHRKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKNGVVYTGSADGVIGVWEVKEGKKKKKKYTLVRTLDNHKSTVNAIALNEGGWAMFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTLRDLLVSGSEDRTLRIWRGNVTNGYHCTTVMDGHRSPVKSWFWFPSKLANGV 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24707532 24708575 - PI0023871.1 Cmetu02g1365 349377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1365 297 Pfam WD domain, G-beta repeat 235 262 IPR001680 GO:0005515
Cmetu02g1365 297 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515
Cmetu02g1365 297 SMART WD40_4 44 84 IPR001680 GO:0005515
Cmetu02g1365 297 SMART WD40_4 129 170 IPR001680 GO:0005515
Cmetu02g1365 297 SMART WD40_4 226 263 IPR001680 GO:0005515
Cmetu02g1365 297 SMART WD40_4 6 40 IPR001680 GO:0005515
Cmetu02g1365 297 SMART WD40_4 180 219 IPR001680 GO:0005515
Cmetu02g1365 297 Gene3D - 127 296 IPR015943 GO:0005515
Cmetu02g1365 297 Gene3D - 2 106 IPR015943 GO:0005515
Cmetu02g1365 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 219 IPR001680 GO:0005515
Cmetu02g1365 297 SUPERFAMILY WD40 repeat-like 18 290 IPR036322 GO:0005515
Cmetu02g1365 297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 262 - -
Cmetu02g1365 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 262 IPR001680 GO:0005515
Cmetu02g1365 297 ProSitePatterns Trp-Asp (WD) repeats signature. 157 171 IPR019775 -
Cmetu02g1365 297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Cmetu02g1365 297 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cmetu02g1365 297 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Cmetu02g1365 297 PRINTS G protein beta WD-40 repeat signature 157 171 IPR020472 -
Cmetu02g1365 297 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 154 286 IPR045182 -
Cmetu02g1365 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 179 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1365 Cmetu-Chr2:24707532 Cmetu10g0004 Cmetu-Chr10:18081056 3.70E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49