Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1493 ATGTACGGTCAAGCAAATTATGCTTCTCAGTTTGGGCAGGGTCCTCAGAAACCATGGCCACCTGCATACCAACAGCGTGCAGGAGCGCCTCCTCCTCCTCCTCCTCCTACCTCATATGTTCAACCAGGTCCTCCAATCCCATCACATCCTATAACTCAACAAGCACCTGCCCCCCCACCTCAGGCTCAACCTCTACATTTGTCTCAGCCGGGTTCCCATGGCCCACCACCTCCCTTCTGTCAGGGCCCATCCATTCAAGTGTTACCTGGTGGGATTACGAATATCCGTCCATATTTTCACACGTTTCCACCAGTCCATGGAAACACACAAGTTTCTGTTTTTAACTCAAATGCTCAGCAGAATGTACAACTTTCACACTCGGGAGTTCAAAATATGCATCATGTTCTACCTCCGCCGCCACCATTACCACCACCACCACCACCTCCACCTCCTTCTCAAGTTCCCAATCCAGATTTATTACGGCCTCCCCAGCCTTCTACTGTAGGATCTCTTCATCCTCCTTCACAAGGACAAGCTTTATATGGAGCTCGAACTCATCAACCATTGCAACAAGGTGGTTTGCAGGTCTTTCCCTCTATTCCACCACACCCAACAACATCCACTTTTCCTACTCCCTTATCCAATTTTCTTGGAAATTCCCATCTGCTTCCAATGGCTCCTCCTCCACCACCATCCTCTCCGCCACCTATTCCACCTTCTCCCCCTCCTCCCACCTCACCCTCTCCATCAATTCCGCACCCAGATTCTTCAAACTTATTGCCTGGGTCTGACTTAGGTCCCAGTTCTACCATTCATTATAGTGAAGACTTGAAGCCCTCTGAAATTGATCAAGGAGGTGCACCTCCCAGTCATTTAGGGGATAATGGACCCAAGCATGACAAACATGGAAACTTAGAAGTTGGGAGTCGACTCATGGTTTCTAAAGTGGACAATGAGATATTGTCAGATAAAGATTATGTGCAGGTTCTTACTCCATCTCCACCTAAGCCAAAAGATGATAGAATTGTCAAGAAGATAGAAGTGTTATGTCAGCTCATTGCTGATAATGGTCCCAGTTTTGAAGACACAACTCGACAAAAGGAATCTGGTAATCCAGAGTTTGAATTTTTATTTGGTGGTGAACGAGGAAGCGAATCTGCAATTGGCCATGAATATTTCCTAAATAACAAAAAATCTCCATTGAGATATTTAAGAATTGAGCCACAGTCTGAGAATTTGACAGTGTCAGCAGCATCCCTTTCACCTGCAAACTCTGACATGGAGATGGAAGATGACATCACCGTAGCTGATATAGAAGAAGGAACTAGTCACTCGTTTGAAATTCAAAGCTACGAGTGCAAACCAAGAAAAGAAGAGCATGATGCAAGGGATTGGGTACAATTACAAGAACCTGAAGTTTTGAGAAGCTGCAGCCCTGAAAAGGAGAAGGTAGCTGAAGATGGAGGGCCAAAACTTCTGCTCAACCACGAAAAATCTGGCAGCATTGCAGCTTGCAAAGTTCACAGCCCTGTCAGAAGTACTGCTGGAGTTGCTGAACATCCTCCAGGAAACGTTTTTGAGAATTCTCTTACCTGCTTACAAAATGAAAAAGGTCTAGCCGGTGAAGTAGCATCTTCTGCAGCCACTATTTCTAGTCAGTCTACTGCACTTATTACAGGTGGCAGCCCATTTAGACTTATACAGGACTATGCGTCCGATGAAAATTCAGAAAGTGACGAGGATTCACACCGTACAGATGTCCATTACATCGCTATCTCACCTTCCACTCCAGCTTATTCCAAGACTTCTGACAAAGACACTGGTGATCTGACTACTCTTGGGTCAAAAGGTTCTTGCCAGGTTCATTGGAGTTATGTTCCACCTTGTGAATTTTCAATGCCCGTACCTGGTGGTCAGCTCCACTCAGAATCACCAAAACAGGTTATTGATGCTACTAAGGCAAATGTCCGAAAGACAGGGAATGAACAAAGTTACAACGACCAACATAATCAAATTGATACTACCACGGGTTCGAAGTCTTTGGATGCAATGAATGGTCGTAGTGTTGATGTACCCCAATATATTGATAAGTTACAAAAGGAAACTGATGCAGAAAAGGGGAGGTTGGGATCATCTCCTGTAAAAATAGATGAATTTGGGAGATTAGTCAGAGAAGGTGGCAGTGATAGTGATTCTGATGATTCCCACTATAGAAGGAGACATAAGAGTAGAAGATCTAGAAATAGTAGTGAAAGCCGTTCTCCTGTTGATAGAAGGAGGGGGCGAAGGAGTCCTCGGAGAAGAAGGGAGAGGCGAAGTCGTTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGACAGAAGCAGATCTCCTGTCAGCAGGCGTACAAGTCAGTTTAGTAATGAGAATAAGAGACGAGATAAGGGTATGATACGGAAATGTTTTGACTTTCAGCGAGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAACAAGAACGATGGTTCAAGATTTCATAGGAGCAAACATCATGATGTTCATCCAACTTCCAAGAATATAAAGATAAGAGAGGACACTATGAACATGTCTAGGGAAGTATCAGATCTTGGGCATACTAAAGTTGAGAATCAGGAGAGCATCCTGCATAATGTATCCCCAAAAGAGGATACTCGTGACTGGAAGACAGATAGTCCTACTGGTGATCCATATTCATTTGTAACTAAATGTCAAAGTTCTAGCGATAGAGCTGGCTTAGTTCAGGATGCATTAATTTGTTCGGAACCAGCTGAGGCTGTCCACGTTCATGCTAACGATGATGGTCAAGAAGCAAAGAAGTCTTATGAGCAACCTTCAGTTACGGCCTCCTCACAATGCATGAGCAACGCTGATACTGAGAAATTATCTGGTGATGTTTCCATGAGCATGCTAACTTCTGAAGAGAATTCTATGGCTCAGCAATCCAACACCTTTGTTGCTGAGCTTCAGTCTTCCAATGACCTCTCGCACCAGATGGATGGTTCTTTTGTCTCCAATTTCTTACTGGATCAAGTAACTGCAGTTACCTCCAATAAAGCTCCTGAATGTGAACATTTTACAGATAGAACTTCATCCATTAAGCCACAGTTTGATACCAGTTCTGCTATTCAGCTACCTTTGACCTCACAAATTTTATCAGAGTCTCCAGTACCAAAACCATTATCTGCTACTCCTCCAGTTAGTGCTACTGATGATGCCCATTCTCTTATAGAGCTGCCTCCTCCGCCGCCTCTCATACTTTCACGTGTCAGTAGTGCTGAGATCTCAATGCCTGCCCCCTATAATTTTGTGTCACAAAATTTGTCCTTTCCTTCTAAATCTTCACTACCAGTAGGTTTTCATCCTCACCACGGTATGGTGTCCATTCAACCATCTCACTATCAAAGTACTTCTTTACTGCCTCCGAAACCATTGTATGATTCATTGGTTCCTGTAACTACCAATGCTGGTATGCCAATGCAATTTCATCAGAGTCATTTGTCTCAAGGACGTGACCTGGGTTCTCAGTCTGTTATGAGTTCCCAGCCACTGGAGCTGCATTCTCATTCTAAGCTTGGTGAGTCCCCAGTGCAAGAGCCATATAGAGCTCCTCCAATGCACATGGATGAGATTAGATCAATTGCCCCAGTTGCAAATAATCGACCTACTCAACCTTTTGGATTCCCAAGCTTTCAGAATGAAGAAAACCTTGGACGGACTTCTGTGGAGATGACTTCTTCCAGTTTTTTTCCTCACCGAAACTTTAGTGATCACTCTATGCCTACTACAAATGCAAATAGAATTCAACCTTCTGGGGACAATTTTCCTCCTAGTGAATTTCGAAGTTCATTTTCACAGTTTCAACCTTATGCACGGTTTCAACAGCCATTGTATACCTCACAACCTGCACATGATAGCTTGTTCCATGACCCAAGCCAGATTGGTAGTATCTCTCGGCATTATCCCGATCCTCTAAGCAGGAGCCATCCGTCCTTGCTTCCTGAATTTGGGGGTTTGGGAATTACCACGTATCATAATCCTTATGCGTCCACTTTTGAGAAGCCGCTTAGCTCCAGTTTCAGATCTAACTTTTTGAACTTTGGGAATGATGCACCTAGTGGTGATATACGTAGTTCTACTTTCAATTTGAGCAGTGTTCATGTCGATGGGCAAGGTACTAATTATGTTGGGTCTAGGCAGACAGTTGCTTCTCCAAATTCCACAAAACCTTTGGGGAAACTCTTGTCTGGTACAGACGGTGATCAATATGATCCACTCTTTGACAGCATTGAGCCATCATCACCTATAACCAAGAAATCCGATCGTGGTCAAAAGCTGAAAAAAGCAAGAGAATCTCATATGATAGCAAGACTTGGTGGTTCCCATAAACTACTAGATGTGGAGGAGAACAACAAGCATAAGGAAGTCGCTCCTGTGACTTCAACTACGTCTCTGGAGAATGATGAATTTGGAGAGACAGGAGATGCAGAAGCTGGTGCTGTTGAGAATGACCTTGACGATGAAGCAAACTTATCAGGAGAAATTGAAATCGATCAGGTCAAGTCCTCCGAGAAGAGCAAGAAATCCAAAGGTTCCAGGTCTCTGAAGCTTTTCAGGATTGCTATTGCTGATTTTGTCAAGGAAGTTTTAAAACCATCATGGCGACAAGGCAACATGAGCAAGGAAGCTTTTAAGACAATTGTCAAGAAGACTGTCGATAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACGAAAACTGACAAAGCTTGTCATGGGTTATGTCGACAAGTACGTTAAGACATAG 4878 43.85 MYGQANYASQFGQGPQKPWPPAYQQRAGAPPPPPPPTSYVQPGPPIPSHPITQQAPAPPPQAQPLHLSQPGSHGPPPPFCQGPSIQVLPGGITNIRPYFHTFPPVHGNTQVSVFNSNAQQNVQLSHSGVQNMHHVLPPPPPLPPPPPPPPPSQVPNPDLLRPPQPSTVGSLHPPSQGQALYGARTHQPLQQGGLQVFPSIPPHPTTSTFPTPLSNFLGNSHLLPMAPPPPPSSPPPIPPSPPPPTSPSPSIPHPDSSNLLPGSDLGPSSTIHYSEDLKPSEIDQGGAPPSHLGDNGPKHDKHGNLEVGSRLMVSKVDNEILSDKDYVQVLTPSPPKPKDDRIVKKIEVLCQLIADNGPSFEDTTRQKESGNPEFEFLFGGERGSESAIGHEYFLNNKKSPLRYLRIEPQSENLTVSAASLSPANSDMEMEDDITVADIEEGTSHSFEIQSYECKPRKEEHDARDWVQLQEPEVLRSCSPEKEKVAEDGGPKLLLNHEKSGSIAACKVHSPVRSTAGVAEHPPGNVFENSLTCLQNEKGLAGEVASSAATISSQSTALITGGSPFRLIQDYASDENSESDEDSHRTDVHYIAISPSTPAYSKTSDKDTGDLTTLGSKGSCQVHWSYVPPCEFSMPVPGGQLHSESPKQVIDATKANVRKTGNEQSYNDQHNQIDTTTGSKSLDAMNGRSVDVPQYIDKLQKETDAEKGRLGSSPVKIDEFGRLVREGGSDSDSDDSHYRRRHKSRRSRNSSESRSPVDRRRGRRSPRRRRERRSRSRSWSPRNQRDRSRSPVSRRTSQFSNENKRRDKGMIRKCFDFQRGRCYRGASCRYVHHEPNKNDGSRFHRSKHHDVHPTSKNIKIREDTMNMSREVSDLGHTKVENQESILHNVSPKEDTRDWKTDSPTGDPYSFVTKCQSSSDRAGLVQDALICSEPAEAVHVHANDDGQEAKKSYEQPSVTASSQCMSNADTEKLSGDVSMSMLTSEENSMAQQSNTFVAELQSSNDLSHQMDGSFVSNFLLDQVTAVTSNKAPECEHFTDRTSSIKPQFDTSSAIQLPLTSQILSESPVPKPLSATPPVSATDDAHSLIELPPPPPLILSRVSSAEISMPAPYNFVSQNLSFPSKSSLPVGFHPHHGMVSIQPSHYQSTSLLPPKPLYDSLVPVTTNAGMPMQFHQSHLSQGRDLGSQSVMSSQPLELHSHSKLGESPVQEPYRAPPMHMDEIRSIAPVANNRPTQPFGFPSFQNEENLGRTSVEMTSSSFFPHRNFSDHSMPTTNANRIQPSGDNFPPSEFRSSFSQFQPYARFQQPLYTSQPAHDSLFHDPSQIGSISRHYPDPLSRSHPSLLPEFGGLGITTYHNPYASTFEKPLSSSFRSNFLNFGNDAPSGDIRSSTFNLSSVHVDGQGTNYVGSRQTVASPNSTKPLGKLLSGTDGDQYDPLFDSIEPSSPITKKSDRGQKLKKARESHMIARLGGSHKLLDVEENNKHKEVAPVTSTTSLENDEFGETGDAEAGAVENDLDDEANLSGEIEIDQVKSSEKSKKSKGSRSLKLFRIAIADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQRKLTKLVMGYVDKYVKT 1625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23270970 23277843 + PI0025784.1 Cmetu02g1493 349505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1493 1625 Gene3D Surp module 331 400 IPR035967 GO:0003723|GO:0006396
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 950 966 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 659 687 - -
Cmetu02g1493 1625 Pfam Surp module 346 379 IPR000061 GO:0003723|GO:0006396
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 252 275 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 1173 1195 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 659 683 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 24 83 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 701 738 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 1405 1459 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 1 87 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 134 162 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 130 308 - -
Cmetu02g1493 1625 ProSiteProfiles Zinc finger C3H1-type profile. 812 834 IPR000571 GO:0046872
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 776 791 - -
Cmetu02g1493 1625 ProSiteProfiles SURP motif repeat profile. 345 393 IPR000061 GO:0003723|GO:0006396
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 170 194 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 1477 1500 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 759 775 - -
Cmetu02g1493 1625 SUPERFAMILY Surp module (SWAP domain) 324 381 IPR035967 GO:0003723|GO:0006396
Cmetu02g1493 1625 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 338 1624 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 223 251 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 1405 1422 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 701 804 - -
Cmetu02g1493 1625 MobiDBLite consensus disorder prediction 941 966 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1493 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1493 Cmetu-Chr2:23270970 Cmetu08g1648 Cmetu-Chr8:18432705 4.50E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33