Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1559 ATGAATGAATATGAATATGAATATGAATCTAAATTTTCTTTTAAGAAAATAATTTCATATAGATCAAGCTACAACAACAATTATTCTGGGTTGGATTGGAACCACACCAATTTTGGGTTACAAGACAACATTTTTGAGGTTGTTCCTTTGTTGGAGAATTTACCAAATAATAATAATGACTCTTTTTTGGACCCTAAAGATATTGCGCCTATTAACACCTATGTATCAGAAGATGGGTTTGGGATTTTGAGTGAAATGGAAAATGGGGTATTTGGGTTTGTTGAGGAAGAGCCATTGTTATTGCTAGAAGGTGGAGAAAATGAAGAACATAAAGAGATGGTGGTGAATAAGAAGGGGAATAAAAGATCAAAGTATTTGAAATCAGAAAATGATTGTAGCAGTAATAATAATGGGAGCTGTTATTCATCATCAAAAATGTTGTCAAGAAAAGTAATATCTGAGTATTTCTATATGCCTATAACTCAAGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGTATAAGAAGATGGCCTCACAGGAAGTTGATGAGCCTACAGACCCTAATCAAGAATGTCAAGGAGATCGAAAAGGGAGATGAAGAAGAAGGAAATGGATCATCAGAGAATTATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCTGATTTGCAATTAGAAGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAATTACAAGAAAAGAAAGCTCTCTAGATTAATCATCAATAATAACAACAACAACATTGATGATATAAATTCCCAAAATTATTTCTCATCCTCAACTACTACCATTCATGATCAAGATGATGATGATGATGATGATGAAGAAATGAAGTATCTCTTGTCTGATTGCTCCTTTACTTCAACTAATTGCATGTTCATGTAA 969 33.13 MNEYEYEYESKFSFKKIISYRSSYNNNYSGLDWNHTNFGLQDNIFEVVPLLENLPNNNNDSFLDPKDIAPINTYVSEDGFGILSEMENGVFGFVEEEPLLLLEGGENEEHKEMVVNKKGNKRSKYLKSENDCSSNNNGSCYSSSKMLSRKVISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGDEEEGNGSSENYKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSRLIINNNNNNIDDINSQNYFSSSTTTIHDQDDDDDDDEEMKYLLSDCSFTSTNCMFM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23692672 23694909 + PI0018455.1 Cmetu02g1559 349571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1559 322 ProSiteProfiles RWP-RK domain profile. 134 216 IPR003035 -
Cmetu02g1559 322 Pfam RWP-RK domain 147 194 IPR003035 -
Cmetu02g1559 322 PANTHER PROTEIN RKD4 142 288 IPR044607 GO:0003700
Cmetu02g1559 322 Coils Coil 218 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1559 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1559 Cmetu-Chr2:23692672 Cmetu06g1936 Cmetu-Chr6:8016821 1.40E-26 dispersed
Cmetu02g1559 Cmetu-Chr2:23692672 Cmetu07g2048 Cmetu-Chr7:23493183 2.30E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1559 . 132 265 AtRKD Transcription Factor Family AT1G18790 65.7 3.0e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7473 PF02042 RWP-RK 1.10E-20 No_clan Cmetu TF