Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1623 ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAACTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTACGAGGCTGAGGCCCGAGTTCGGGACCCCGTCTACGGTTGCGTTGGGGCAATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTTCGCATGCAACGAAATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAGCCTCGGCACTCGCCCAAGGGCGTTAGATCAATATCACACAAGTTCAACAAGTGGATATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTGGAAATAACATCAATGAAGGAGGAAGAGATGGCAATATTTGA 552 46.74 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPSLGTRPRALDQYHTSSTSGYYNQHLPAFPMAYPLPWNENTSGNNINEGGRDGNI 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24558890 24561337 - PI0014787.1 Cmetu02g1623 349635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1623 183 Coils Coil 89 116 - -
Cmetu02g1623 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cmetu02g1623 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
Cmetu02g1623 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1623 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1623 Cmetu-Chr2:24558890 Cmetu05g1558 Cmetu-Chr5:7264711 5.40E-47 dispersed
Cmetu01g0277 Cmetu-Chr1:28745773 Cmetu02g1623 Cmetu-Chr2:24558890 1.10E-22 transposed
Cmetu04g2865 Cmetu-Chr4:854127 Cmetu02g1623 Cmetu-Chr2:24558890 2.00E-31 transposed
Cmetu12g0285 Cmetu-Chr12:2598670 Cmetu02g1623 Cmetu-Chr2:24558890 3.90E-52 wgd
Cmetu02g1623 Cmetu-Chr2:24558890 Cmetu04g0467 Cmetu-Chr4:9660224 1.20E-57 wgd
Cmetu02g1623 Cmetu-Chr2:24558890 Cmetu09g1035 Cmetu-Chr9:18831476 1.90E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1558 . 16 233 AS2 family AT1G65620 66.8 1.4e-69 259.6
Cmetu11g2276 . 2 110 AS2 family AT1G65620 81.7 6.9e-48 187.6
Cmetu02g1623 . 3 177 AS2 family AT1G65620 53.3 2.9e-46 182.2
Cmetu04g0467 . 21 131 AS2 family AT1G65620 70.3 2.3e-43 172.6
Cmetu09g1035 . 1 115 AS2 family AT1G65620 70.4 6.7e-43 171.0
Cmetu12g0285 . 1 116 AS2 family AT1G65620 69.0 5.3e-40 161.4
Cmetu11g2276 . 1 122 AS2 family AT5G66870 86.9 2.0e-57 219.9
Cmetu05g1558 . 19 153 AS2 family AT5G66870 68.4 1.9e-44 176.8
Cmetu02g1623 . 1 113 AS2 family AT5G66870 68.1 2.4e-39 159.8
Cmetu04g0467 . 25 131 AS2 family AT5G66870 68.2 3.2e-39 159.5
Cmetu09g1035 . 1 121 AS2 family AT5G66870 62.8 4.2e-39 159.1
Cmetu12g0285 . 12 138 AS2 family AT5G66870 62.2 1.2e-38 157.5
Cmetu11g2276 . 4 118 AS2 family AT2G23660 69.6 4.3e-44 175.6
Cmetu05g1558 . 21 127 AS2 family AT2G23660 69.2 8.3e-40 161.4
Cmetu02g1623 . 8 113 AS2 family AT2G23660 64.2 2.0e-38 156.8
Cmetu04g0467 . 25 141 AS2 family AT2G23660 58.1 2.3e-37 153.3
Cmetu12g0285 . 12 116 AS2 family AT2G23660 65.7 1.9e-36 150.2
Cmetu09g1035 . 4 114 AS2 family AT3G27650 87.4 3.0e-54 208.4
Cmetu04g0467 . 22 132 AS2 family AT3G27650 84.7 2.2e-52 202.2
Cmetu02g1623 . 4 114 AS2 family AT3G27650 78.4 2.1e-47 185.7
Cmetu12g0285 . 7 117 AS2 family AT3G27650 73.9 4.9e-44 174.5
Cmetu05g1558 . 18 127 AS2 family AT3G27650 68.2 7.8e-42 167.2
Cmetu11g2276 . 4 112 AS2 family AT3G27650 67.9 4.3e-40 161.4
Cmetu02g1623 . 3 166 AS2 family AT5G63090 68.2 3.4e-57 218.4
Cmetu04g0467 . 20 143 AS2 family AT5G63090 78.2 5.7e-52 201.1
Cmetu09g1035 . 1 113 AS2 family AT5G63090 85.1 2.4e-50 195.7
Cmetu12g0285 . 7 116 AS2 family AT5G63090 82.7 6.9e-50 194.1
Cmetu05g1558 . 18 127 AS2 family AT5G63090 74.5 2.3e-45 179.1
Cmetu11g2276 . 2 110 AS2 family AT5G63090 70.6 1.7e-40 162.9
Cmetu12g1460 . 14 153 AS2 family AT5G63090 56.4 7.2e-39 157.5
Cmetu11g1961 . 14 117 AS2 family AT5G63090 67.3 1.4e-37 153.3
Cmetu11g2099 . 2 137 AS2 family AT2G30130 69.1 6.1e-49 191.0
Cmetu12g1460 . 10 129 AS2 family AT2G30130 69.2 2.4e-45 179.1
Cmetu11g1961 . 10 125 AS2 family AT2G30130 72.4 7.0e-45 177.6
Cmetu01g1532 . 16 127 AS2 family AT2G30130 70.5 1.9e-42 169.5
Cmetu02g1623 . 8 111 AS2 family AT2G30130 68.3 1.4e-37 153.3
Cmetu10g0272 . 39 150 AS2 family AT2G30130 66.1 2.4e-37 152.5
Cmetu05g1558 . 22 124 AS2 family AT2G30130 67.0 9.1e-37 150.6
Cmetu04g0467 . 26 129 AS2 family AT2G30130 65.4 1.2e-36 150.2
Cmetu12g1460 . 4 170 AS2 family AT1G31320 74.6 1.9e-65 245.7
Cmetu11g1961 . 1 171 AS2 family AT1G31320 72.0 1.4e-60 229.6
Cmetu01g1532 . 18 131 AS2 family AT1G31320 76.3 6.6e-47 184.1
Cmetu11g2099 . 6 113 AS2 family AT1G31320 68.5 3.5e-40 161.8
Cmetu10g0272 . 48 160 AS2 family AT1G31320 62.8 2.1e-37 152.5
Cmetu02g1623 . 9 120 AS2 family AT1G31320 62.5 8.1e-37 150.6
Cmetu12g0199 . 34 205 AS2 family AT2G28500 54.6 7.6e-46 181.0
Cmetu11g0670 . 33 198 AS2 family AT2G28500 53.2 4.6e-43 171.8
Cmetu12g0582 . 20 134 AS2 family AT2G28500 68.7 1.3e-42 170.2
Cmetu10g0142 . 47 139 AS2 family AT2G28500 88.2 1.7e-42 169.9
Cmetu11g1961 . 13 120 AS2 family AT2G28500 67.6 8.4e-37 151.0
Cmetu11g0670 . 33 198 AS2 family AT1G07900 63.9 4.0e-45 178.3
Cmetu10g0142 . 47 202 AS2 family AT1G07900 68.9 2.0e-44 176.0
Cmetu12g0199 . 29 152 AS2 family AT1G07900 69.4 8.4e-43 170.6
Cmetu12g0582 . 20 134 AS2 family AT1G07900 65.2 3.3e-39 158.7
Cmetu11g1961 . 6 171 AS2 family AT1G16530 57.1 9.8e-48 186.8
Cmetu12g1460 . 4 119 AS2 family AT1G16530 67.5 6.2e-42 167.5
Cmetu01g1532 . 20 126 AS2 family AT1G16530 68.5 1.1e-38 156.8
Cmetu11g2099 . 6 148 AS2 family AT1G16530 54.2 6.0e-37 151.0
Cmetu10g0272 . 1 157 AS2 family AT2G30340 70.2 2.0e-58 223.0
Cmetu03g1506 . 60 170 AS2 family AT2G30340 79.3 7.7e-50 194.5
Cmetu10g0272 . 32 157 AS2 family AT2G40470 87.3 3.0e-59 225.3
Cmetu03g1506 . 60 169 AS2 family AT2G40470 86.4 7.9e-52 200.7
Cmetu11g1961 . 11 121 AS2 family AT2G40470 65.8 4.1e-40 161.8
Cmetu01g1532 . 22 126 AS2 family AT2G40470 66.7 3.2e-37 152.1
Cmetu12g1460 . 15 125 AS2 family AT2G40470 62.2 3.2e-37 152.1
Cmetu03g0340 . 1 119 AS2 family AT3G11090 78.2 8.3e-47 183.7
Cmetu04g2214 . 1 95 AS2 family AT2G42440 84.2 6.3e-43 171.4
Cmetu01g0205 . 7 143 AS2 family AT2G42440 62.0 3.1e-42 169.1
Cmetu11g1613 . 29 138 AS2 family AT2G42440 65.2 3.0e-37 152.5
Cmetu01g0205 . 4 126 AS2 family AT3G58190 76.0 5.3e-49 191.4
Cmetu04g2214 . 4 95 AS2 family AT3G58190 90.2 4.6e-45 178.3
Cmetu11g1613 . 29 127 AS2 family AT3G58190 74.7 5.8e-40 161.4
Cmetu04g1957 . 30 148 AS2 family AT3G58190 61.3 1.6e-37 153.3
Cmetu04g2214 . 1 172 AS2 family AT2G31310 54.3 5.6e-39 157.9
Cmetu11g1613 . 16 131 AS2 family AT2G42430 69.0 7.7e-41 164.5
Cmetu04g1957 . 29 169 AS2 family AT2G42430 56.7 7.2e-39 157.9
Cmetu04g2214 . 3 94 AS2 family AT2G42430 80.4 9.5e-39 157.5
Cmetu06g2544 . 16 126 AS2 family AT2G42430 64.9 8.0e-38 154.5
Cmetu01g0205 . 5 114 AS2 family AT2G42430 65.5 3.0e-37 152.5
Cmetu11g1613 . 29 221 AS2 family AT4G00220 64.1 7.7e-59 224.2
Cmetu06g2544 . 24 190 AS2 family AT4G00220 53.6 1.0e-42 170.6
Cmetu11g0828 . 17 213 AS2 family AT4G00220 54.4 2.3e-39 159.5
Cmetu11g1613 . 29 240 AS2 family AT2G45420 69.0 9.1e-72 267.3
Cmetu06g2544 . 24 197 AS2 family AT2G45420 53.8 1.7e-49 193.4
Cmetu04g1957 . 30 136 AS2 family AT2G45420 74.8 7.5e-42 167.9
Cmetu01g0205 . 12 118 AS2 family AT2G45420 70.1 2.4e-40 162.9
Cmetu04g2214 . 7 95 AS2 family AT2G45420 76.4 1.6e-36 150.2
Cmetu04g1957 . 30 143 AS2 family AT3G03760 86.0 2.0e-50 196.4
Cmetu11g1613 . 29 130 AS2 family AT3G03760 80.4 2.5e-40 162.9
Cmetu11g1613 . 29 139 AS2 family AT4G00210 73.0 1.5e-43 173.3
Cmetu06g2544 . 16 133 AS2 family AT4G00210 63.9 4.1e-41 165.2
Cmetu01g0205 . 5 116 AS2 family AT4G00210 62.5 1.2e-37 153.7
Cmetu11g1613 . 29 224 AS2 family AT2G45410 51.0 1.6e-46 183.0
Cmetu04g1957 . 30 131 AS2 family AT2G45410 67.6 1.2e-36 150.2
Cmetu10g0887 . 7 117 AS2 family AT5G06080 73.0 2.1e-43 172.6
Cmetu01g0277 . 29 137 AS2 family AT3G13850 76.1 1.8e-43 173.3
Cmetu06g0556 . 1 162 AS2 family AT1G68510 65.9 4.6e-59 224.9
Cmetu02g2079 . 1 167 AS2 family AT1G68510 60.9 2.0e-54 209.5
Cmetu10g0994 . 1 136 AS2 family AT1G68510 65.5 4.3e-49 191.8
Cmetu08g0194 . 1 104 AS2 family AT1G68510 63.5 1.8e-39 159.8
Cmetu07g1035 . 1 104 AS2 family AT1G68510 64.4 1.1e-36 150.6
Cmetu06g0556 . 1 298 AS2 family AT1G67100 50.2 8.9e-71 263.8
Cmetu02g2079 . 1 134 AS2 family AT1G67100 75.7 1.9e-60 229.6
Cmetu10g0994 . 1 132 AS2 family AT1G67100 67.1 6.0e-51 198.0
Cmetu08g0194 . 1 110 AS2 family AT1G67100 66.4 4.2e-44 175.3
Cmetu07g1035 . 1 110 AS2 family AT1G67100 61.8 1.5e-38 156.8
Cmetu06g0556 . 1 298 AS2 family AT3G02550 56.7 2.4e-80 295.8
Cmetu02g2079 . 1 167 AS2 family AT3G02550 67.6 3.5e-63 238.8
Cmetu10g0994 . 1 141 AS2 family AT3G02550 64.1 7.0e-48 188.0
Cmetu08g0194 . 1 136 AS2 family AT3G02550 54.4 1.6e-39 160.2
Cmetu08g0194 . 1 233 AS2 family AT5G67420 58.1 2.8e-70 262.3
Cmetu07g1035 . 1 127 AS2 family AT5G67420 64.4 7.4e-47 184.5
Cmetu06g0556 . 3 112 AS2 family AT5G67420 68.2 1.2e-44 177.2
Cmetu02g2079 . 3 112 AS2 family AT5G67420 61.8 2.3e-40 162.9
Cmetu10g0994 . 3 106 AS2 family AT5G67420 63.5 1.3e-38 157.1
Cmetu08g0194 . 1 232 AS2 family AT3G49940 60.6 5.0e-72 268.1
Cmetu06g0556 . 3 157 AS2 family AT3G49940 52.9 5.2e-45 178.3
Cmetu02g2079 . 3 112 AS2 family AT3G49940 62.7 1.7e-40 163.3
Cmetu10g0994 . 3 106 AS2 family AT3G49940 64.4 1.4e-37 153.7
Cmetu08g0194 . 1 233 AS2 family AT4G37540 57.1 7.3e-68 254.2
Cmetu06g0556 . 3 113 AS2 family AT4G37540 65.8 9.0e-42 167.5
Cmetu02g2079 . 3 113 AS2 family AT4G37540 63.1 4.9e-40 161.8
Cmetu10g0994 . 3 126 AS2 family AT4G37540 55.6 5.1e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004254 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7476 PF03195 LOB 2.70E-42 No_clan Cmetu TF