Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1625 ATGGAAGATTTTGATAATCACATTCCATTAAAGGGGGAAGAAGATGATCAATTTCCTATTGGTTTAAAAGTGCTTGCAATTGATAACAACATTGTGTGCCTTCGTTATCTTGTTGAACTCCTTCAAAAATGTCAATATAAAGTAACTGCAACAACGGAAGCAGCGGAAGCAATAAGACTACTAAAGGATGAAAAACAAACATTTGATATTGTTATTACCAATGTTGTCAGACACGACATGGATGGCTTCAAGATACTTCAAACTATTGGCGTCGGAATGGATATTCCGGTTGTTATTGTATCCGCTAATGAAGAATTGGACACGATGATGAGGGGAGTTGTAGAGGGAGCTAAGGATTACTTACTAAAGCCTGTCAGGCTACAAGAATTGAGAAATATTTGGCAACACGTTTTGCGCAAAAGATTAGCTCGTAAAAGACCAAACCCTAATCTTCTTCTGTTGGAAGAGCAAGTTGTGTTAGAAGAAGAAGATCATAACATCACTCAAAGGGTTGCAATTAATCAACAAGACTATGATCAAAGTAACGAGATTTTTAAATTAAATGATGGTAATAATTATGTTGCTGATGATTCTTCTTCTAAAAAGAAGAAACGAATAAGTTGGACAAAGGAGTTGCATGAAAAATTTGTTGAAGCTTATGAACAGTTGGGAGAAAAAGAGAGAGTGCCAAATAACATATTGAAGCTGATGAACGATTCTAGGTTGACACGAGAGAACGTCGCGAGTCATCTTCAGAAACACAGAGATACACTGAAAAAGAAGAAAGCAAGTGGAGTTGGAAAATTAGGAAGCCACAAAAATTTATACGATAGAAATCCAACAAAAGGATCCACACTTTACAATTCGATGAATCAAATTAACAAAGTTCCAAATTTGGGGCCTCAATTGGGAATAATTAATGGCGGCCAAGGAAATCAAAACCATAAATCAACGTGGACGGCGGCCGGAAGTTGCTTTCCGGTGCCGGAATCCAAAGGGTTTAATTTTCCTTCCAATAATTCGATTTCAAAACCATGTGATGATGATAATCAGCAATACTTGGGAGGATTTGATGATCCTGCAATTAACATTAATTCTTATTATCCTCCCTTGCAAACTAATTGCAATTTCAATTCAACCTCTCAAAATTTCAGTTTATTAATGGATGACGAGCTCAGTGACATTTTCAAATAA 1194 36.26 MEDFDNHIPLKGEEDDQFPIGLKVLAIDNNIVCLRYLVELLQKCQYKVTATTEAAEAIRLLKDEKQTFDIVITNVVRHDMDGFKILQTIGVGMDIPVVIVSANEELDTMMRGVVEGAKDYLLKPVRLQELRNIWQHVLRKRLARKRPNPNLLLLEEQVVLEEEDHNITQRVAINQQDYDQSNEIFKLNDGNNYVADDSSSKKKKRISWTKELHEKFVEAYEQLGEKERVPNNILKLMNDSRLTRENVASHLQKHRDTLKKKKASGVGKLGSHKNLYDRNPTKGSTLYNSMNQINKVPNLGPQLGIINGGQGNQNHKSTWTAAGSCFPVPESKGFNFPSNNSISKPCDDDNQQYLGGFDDPAININSYYPPLQTNCNFNSTSQNFSLLMDDELSDIFK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21521691 21523414 + PI0013565.1 Cmetu02g1625 349637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1625 397 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 295 IPR045279 GO:0009736
Cmetu02g1625 397 CDD REC_typeB_ARR-like 24 138 - -
Cmetu02g1625 397 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Cmetu02g1625 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Cmetu02g1625 397 Gene3D - 22 150 - -
Cmetu02g1625 397 Gene3D - 199 261 - -
Cmetu02g1625 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Cmetu02g1625 397 Pfam Myb-like DNA-binding domain 207 254 IPR001005 -
Cmetu02g1625 397 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Cmetu02g1625 397 SMART REC_2 22 134 IPR001789 GO:0000160
Cmetu02g1625 397 FunFam Two-component response regulator 199 262 - -
Cmetu02g1625 397 SUPERFAMILY CheY-like 22 153 IPR011006 -
Cmetu02g1625 397 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Cmetu02g1625 397 MobiDBLite consensus disorder prediction 253 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1625 K14491 - - csv:105434494 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0880 Cmetu-Chr1:25133273 Cmetu02g1625 Cmetu-Chr2:21521691 7.80E-15 dispersed
Cmetu02g1625 Cmetu-Chr2:21521691 Cmetu05g0860 Cmetu-Chr5:1640696 4.70E-48 dispersed
Cmetu02g1625 Cmetu-Chr2:21521691 Cmetu02g1717 Cmetu-Chr2:20518373 5.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g523 . . Bda01g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1730 . . . . . . . . Bhi09g02983 Tan01g3584 Cmetu02g1625 . Hepe01g1979 Mch11g0515 . . . . . . . . . . . Cme07g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004783 0 0 0 0 0 2 1 2 2 3 2 2 1 1 1 1 2 0 1 2 2 2 2 1 2 1 1 3 4 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7477 PF00072 Response_reg 2.10E-17 CL0304 Cmetu TF