Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1658 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAATCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAGGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTACTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGAAAGGGTGATGCCATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTACTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGTACACCAATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGAGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTAATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTGCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAAGAACTTCTTGCTTTGTTAGAGCATGATAACACAAAGTATCCAATTAATGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGAGATGGAGGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGACGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGTGTTGCTGGAAATCATGAGAAATTAGCCGCTTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAAGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACTTTCAAGCAGATAGACATTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACCGGATTAGTGGTATCTGGGAGGAAGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTTCAGTTACGTTATGGAAACCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGAGATTGCTGCAGAGAGTCACGCTCTTCAGTTGGCTGAGGTTAAGCCTAACCAAAACGTTGGAGAAAAGGCTGATAGTTCCGAAGCCATGTCTGCATCAGTAGCAGCCGTTGATTGTGAAAATTCAGTGCCTGTTACCACCTCTATTGAATTAACGGGTGAACAACCGAACTCATCTGTGGGACATGAACACAAAACTAATCAGGCCATGGATATCGACATGGAAAAAGAAAGTGTAGCAGTGAATATGGACATTGGTTTATCTGATAACAAACTACCGTCTGCAGCGGGAGATGCATCAGTGCCTGACAATGGCTTCGAAGAGTCTGATAAAAGTCAAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTGATGCAAATGGCACTTCAGATTCGGTTGATGGTGCAACTATTGAAAATGATAAATTTAGTACTGATATTGTCGAGGAAGTCAAAGATGTCGAAACTCAGCAGCCTGTGATTGAAACTGAAAATAACTCAGATATGCATTCGATTAATCTGGATGCGGCTGCACCTGCATCTTCTTATGAGGATGGCCCTGTGAATGATGGCAACACGGGAATGGAATCAAATGTGTAG 3054 43.78 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIARNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSAFVPPTPIEQADEMIRKELLALLEHDNTKYPINEKVNKEKKKGSKRTGNGPTAVIPTIDDFEETEMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDIAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDRKAQAQKEEEIAAESHALQLAEVKPNQNVGEKADSSEAMSASVAAVDCENSVPVTTSIELTGEQPNSSVGHEHKTNQAMDIDMEKESVAVNMDIGLSDNKLPSAAGDASVPDNGFEESDKSQTIDVPSQELLGPDANGTSDSVDGATIENDKFSTDIVEEVKDVETQQPVIETENNSDMHSINLDAAAPASSYEDGPVNDGNTGMESNV 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13260946 13290257 + PI0019950.1 Cmetu02g1658 349670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1658 1017 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cmetu02g1658 1017 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmetu02g1658 1017 Coils Coil 167 187 - -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 923 955 - -
Cmetu02g1658 1017 SMART sant 58 105 IPR001005 -
Cmetu02g1658 1017 SMART sant 6 55 IPR001005 -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 400 414 - -
Cmetu02g1658 1017 Gene3D - 5 58 - -
Cmetu02g1658 1017 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 382 421 - -
Cmetu02g1658 1017 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cmetu02g1658 1017 Pfam Myb-like DNA-binding domain 10 70 - -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 601 620 - -
Cmetu02g1658 1017 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Cmetu02g1658 1017 CDD SANT_CDC5_II 55 106 IPR047240 -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 908 955 - -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 157 176 - -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 969 1017 - -
Cmetu02g1658 1017 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 805 IPR047242 GO:0000398|GO:0000974
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 110 150 - -
Cmetu02g1658 1017 Gene3D - 59 114 - -
Cmetu02g1658 1017 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cmetu02g1658 1017 MobiDBLite consensus disorder prediction 976 990 - -
Cmetu02g1658 1017 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmetu02g1658 1017 CDD SANT 10 53 IPR001005 -
Cmetu02g1658 1017 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1658 K12860 - - csv:101205030 1849.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2255 Cmetu-Chr1:26706752 Cmetu02g1658 Cmetu-Chr2:13260946 0.00E+00 dispersed
Cmetu02g1658 Cmetu-Chr2:13260946 Cmetu10g0044 Cmetu-Chr10:19221334 1.40E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7479 PF11831 Myb_Cef 2.10E-58 No_clan Cmetu TF