Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1708 ATGGGGAAAGCAACGAGATGGTTCAAGAACTTATTCGGGATTAAGAGAGACAAAGAACCCACAAAAGAAATTCCCAAATCAAAACCCACCACCGCCGTAGACGCCCAACTCTGTAACAATCCGGCCACAATACCGCCGAATTTATCAGCGGCGGAGGCCGCTTGGTTGAAATCGTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCCATAGCTGTAGCTGCAGCCACTGCCGCTGCAGCCGATGCGGCCGTTGCTGCAGCACAAGCCGCCGTGGCAGTTGTCCGGTTAACCAGCCACGGTAGAGGCACTATGTTCGGCGGCGGACGGGAAAGATGGGCTTCCGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTTAGAGCTTTGAAAGGATTAGTGAAATTACAAGCACTTGTTAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAAAGAACTCGTAGATTCATAAACGACGCTAGAAAATCAACGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCAGTTCACAGTAGAAGACTCTCTGCTTCATTAGACAACACAACTTTTATGGAAGAAAGCCCCAAAATCGTTGAAATAGACACCGGCCGGCCAAAATCCTGGTCACGACGGACGAACACGTCGGCGTCGGAATTAAGCGATGACCCATTTCACCAAACGCTTTCTTCTCCACTCCCTTGTCGGACTCCTTCCCGTTTGCAAATTCCCGATTGCCGGAATTTCCATGACAACTCTGATTTTTGCGGTGGCGATGACTGGCGTTTGATCTCGACGGCACAGAGCACTCCACGATTTATAGGATCTGGGGGTGGATCGAACGGTCCACCAACGCCGGCGAAGAGTATGTGTGGGGAGAATTTTTTCAGAGGGTATTTGAATTTTCCGAATTACATGGCGAATACTCAATCGTTCAAGGCGAAATTGAGGTCTCAGAGTGCGCCGAAACAGAGGCCGGAGATTGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGGAACAGTCTTAGTGGGGTTAAAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAATGCAGTGATGAGTAAACTCGATCGGCCATCAGAATTCAACAATTTGCAGAGGAAATTATGA 1230 47.24 MGKATRWFKNLFGIKRDKEPTKEIPKSKPTTAVDAQLCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDARKSTERFDDTKSEHTASVHSRRLSASLDNTTFMEESPKIVEIDTGRPKSWSRRTNTSASELSDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDNSDFCGGDDWRLISTAQSTPRFIGSGGGSNGPPTPAKSMCGENFFRGYLNFPNYMANTQSFKAKLRSQSAPKQRPEIGSKKRVSLNELMESRNSLSGVKMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRKL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1640438 1642047 + PI0008896.1 Cmetu02g1708 349720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1708 409 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cmetu02g1708 409 MobiDBLite consensus disorder prediction 226 257 - -
Cmetu02g1708 409 SMART iq_5 111 133 IPR000048 GO:0005515
Cmetu02g1708 409 SMART iq_5 134 155 IPR000048 GO:0005515
Cmetu02g1708 409 MobiDBLite consensus disorder prediction 177 204 - -
Cmetu02g1708 409 ProSiteProfiles IQ motif profile. 160 189 IPR000048 GO:0005515
Cmetu02g1708 409 MobiDBLite consensus disorder prediction 177 201 - -
Cmetu02g1708 409 Pfam Protein of unknown function (DUF4005) 304 374 IPR025064 -
Cmetu02g1708 409 Gene3D - 109 159 - -
Cmetu02g1708 409 MobiDBLite consensus disorder prediction 232 257 - -
Cmetu02g1708 409 PANTHER IQ-DOMAIN 5-RELATED 1 371 - -
Cmetu02g1708 409 Pfam IQ calmodulin-binding motif 139 153 IPR000048 GO:0005515
Cmetu02g1708 409 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515
Cmetu02g1708 409 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0049 Cmetu-Chr1:29059855 Cmetu02g1708 Cmetu-Chr2:1640438 2.20E-75 dispersed
Cmetu02g1708 Cmetu-Chr2:1640438 Cmetu06g2556 Cmetu-Chr6:3945999 8.10E-27 dispersed
Cmetu02g1708 Cmetu-Chr2:1640438 Cmetu04g0490 Cmetu-Chr4:13060046 8.60E-45 wgd
Cmetu02g1708 Cmetu-Chr2:1640438 Cmetu05g1762 Cmetu-Chr5:2399565 7.10E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37