Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1725 ATGGATGAAATGGTCGAGGTTGATGGGTTAGCTCATCCTGCAGTTGTAGATGATAGTGATGTTGACCCTCATGAAGGTGAAATTAATACTGTTGAAGATTCTGGTCTTCATGATGAAGATGGAATCATTGAACCTTTTGTAGGCATGGAATTTGAATCTGAAGGCGATGCCAAGACCTTCTACGATGAGTATGCTAGACGCTTTGGTTTTAGTTCAAAACTCGGCCAACTTAGTCGTTCTAAATCTGATGGAACTATAGTTGCTAGAGAATTCGTATGTGGTAGAGAGTGCTCAAAAAGAAAATCAGCTGATAGTTGTGATGCAATGCTTAGGATAGAGTTGAAAGATCAGGATAAATGGGTTGTCACAAAGTTTGTGAAGGAGCATAGTCATTCTACAGTTAATTCTAGTAAGGTGCAGTATCTACGGCCACGCAGACATTTTGCTGGTGCTGCAAAGACCATGACTGAAGCTTACACTGGTTCGGCAGGTGTTCCCAGTGGTGTCATGTCTGTATTAATGGACGACAACCGTGTACCTGCAGAGAAAAATCGTGGAGGTAGAACTACATCTCAAGCTGAAGCTAATCGGTCGCTTAATAATGCGTCAACTATGAATTATGCCATCAGGAATGCTGGTCGAAAGAGGACACTGGGGAGGGATGCTCAGAATATGCTGGAATATTTTAAGAAAATGCAGTCTGAGAATCCTGGATTTTTTTATGCAATTCAACTTGATGAAGATAATCGAATGGCTAATGTATTTTGGGCAGATGCAAGGTCTCGAGCAGCGTACAGTCATTTTGGTGATGCAGTTACATTGGATACAATGTACAGAGTTAACCAATTCAGAGTTCCATTTGCTCCATTCACTGGAGTGAACCATCATGGTCAGACGATTTTGTTTGGATGTGCTTTACTTCTTGATGAATCTGAGGCTTCTTTTGTTTGGTTGTTCAAAACATTTCTAACCGCAATGAATGATCGTCAGCCTGTTTCAATTACCACTGATCAAGACAGAGCCATACATGTAGCTGTTGCTCAAGTGTTTCCAGAAGCCCGACACTGCATTAGTAGATGGCATGTCTTAAGGGAAGGCCAGCAAAAATTAGCTCATGTATGTCTCACACATCCAAATTTTCAAGTTGAACTTTACAATTGTATCAACTTGACTGAAACTATTGAGGAATTTGAGTCAGCTTGGAATTGTATCATTGAAAAATATAATTTAGGGAGAAATGATTGGCTCCTATCATTATATAATGCACGCGCTCAGTGGGTTCCTGTATATGTCCGTGATTCATTTTTTGCTGTTATATCTCCTAATCAAGGATATGATAATTCCTTTTTTGATGGATACGTGAATCAGCAGACCACATTACCATTGTTCTTTAGACAGTATGAACGAGCTTTAGAAAATTGGTTTGAAAAGGAAATAGAAGCAGACTTTGATACGATGTGCACTACACCTGTACTGAGGACACCATCTCCTATGGAGAAACAGGCAGCAAATCTTTATACAAGGAAAATTTTTGCAAAATTTCAAGAGGAGCTTGTTGAAACTTTTGTCTATACTGCAAATCGAATTGAAGGTGATGCAGCTCTTAGCACTTTTAGGGTTGCTAAATTTGAAGATGATCAGAAGGCATATGTTGTCACATTGAATTATCCAGATATGAGAGCTAATTGTAGTTGTCAAATGTTCGAGTATTCAGGCATTCTTTGCAGACATGTATTGACCGTCTTCACAGTAACTAATGTACTTACATTACCATCTCATTACATCTTGAAAAGATGGACAAGAAATGCAAGGAGTGGACTTGGATCGGATGAGTGTGCTATTGAGTTACATGGCCAGGAGTCTTTATCATCAAGGTTCAATAATTTATGCCGAGAAGCAATCAGGTATGCAGAGGAAGGGGCAACTGCTCCAGAAACTTATAATGTTGCCATGACTGCACTTAAAGAAGCTGGGAAAAAAGTGGCCATTGTCAAGAAGAATGTAGCAAAAGTTACACCTCCTAGCTCTCAGGTTAGTCGGGCTGGCTATGATGAGAGGAAGACCTCAGCTTCAGCGTCAGATACAACTCCACTGTTGTGGCCTCGTCAAGATGAAGTTATGAGACGATTTAATCTTAATGATGCTGGTGCTCCTGTCCAATCTATTGCTGATTTGAATTACCCACATATAGCTCCTGTGTCCCTTCACCGAGATGATAATCCTCCCGACCACATGGCTGTTCTTCCTTATCTGAAATCAATGACTTGGGTGATGGAGAATAAAAATTCAACCACAGGAAACAGAGTTGCTGTTATCAACCTGAAGCTGCAAGACTACAGTAGGAGTCCGTCTGCAGAATCGGAAGTTAAGTTTCAACTCTCAAGGGTTTCACTGGAGCCAATGTTGAGGTCTATGGCATACATCAGTGAACAGCTATCGACACCAGCTAACAAAGTTGCTGTCATCAACTTGAAGCTTCAAGATACTGAGACAACTTCTGGAGAGTCCGAGGTTAAGTTTCAGGTCTCTAGAGATACATTGGGTGCAATGTTGAGGTCAATGGCCTACATTCGTGAGCAGCTTTCGAATGCTGCTGAGTCAGAACCTCTTCCAAAAAAGCAAAGAAAGTAA 2631 40.74 MDEMVEVDGLAHPAVVDDSDVDPHEGEINTVEDSGLHDEDGIIEPFVGMEFESEGDAKTFYDEYARRFGFSSKLGQLSRSKSDGTIVAREFVCGRECSKRKSADSCDAMLRIELKDQDKWVVTKFVKEHSHSTVNSSKVQYLRPRRHFAGAAKTMTEAYTGSAGVPSGVMSVLMDDNRVPAEKNRGGRTTSQAEANRSLNNASTMNYAIRNAGRKRTLGRDAQNMLEYFKKMQSENPGFFYAIQLDEDNRMANVFWADARSRAAYSHFGDAVTLDTMYRVNQFRVPFAPFTGVNHHGQTILFGCALLLDESEASFVWLFKTFLTAMNDRQPVSITTDQDRAIHVAVAQVFPEARHCISRWHVLREGQQKLAHVCLTHPNFQVELYNCINLTETIEEFESAWNCIIEKYNLGRNDWLLSLYNARAQWVPVYVRDSFFAVISPNQGYDNSFFDGYVNQQTTLPLFFRQYERALENWFEKEIEADFDTMCTTPVLRTPSPMEKQAANLYTRKIFAKFQEELVETFVYTANRIEGDAALSTFRVAKFEDDQKAYVVTLNYPDMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNARSGLGSDECAIELHGQESLSSRFNNLCREAIRYAEEGATAPETYNVAMTALKEAGKKVAIVKKNVAKVTPPSSQVSRAGYDERKTSASASDTTPLLWPRQDEVMRRFNLNDAGAPVQSIADLNYPHIAPVSLHRDDNPPDHMAVLPYLKSMTWVMENKNSTTGNRVAVINLKLQDYSRSPSAESEVKFQLSRVSLEPMLRSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSNAAESEPLPKKQRK 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3482051 3488792 + PI0027294.1 Cmetu02g1725 349737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1725 876 Pfam FAR1 DNA-binding domain 59 133 IPR004330 -
Cmetu02g1725 876 MobiDBLite consensus disorder prediction 674 696 - -
Cmetu02g1725 876 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 662 IPR031052 GO:0006355
Cmetu02g1725 876 Pfam SWIM zinc finger 551 584 IPR007527 GO:0008270
Cmetu02g1725 876 SMART 26again6 561 588 IPR006564 GO:0008270
Cmetu02g1725 876 Pfam MULE transposase domain 272 363 IPR018289 -
Cmetu02g1725 876 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1725 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1725 Cmetu-Chr2:3482051 Cmetu11g0555 Cmetu-Chr11:17788508 6.20E-149 dispersed
Cmetu02g1725 Cmetu-Chr2:3482051 Cmetu01g2261 Cmetu-Chr1:4309008 3.60E-181 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7483 PF10551 MULE 5.50E-24 CL0219 Cmetu TF