Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1753 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAACCCCCCGATGGCCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACGGACACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCATTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAGAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTATCCTCAGCAGTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGCGAGAGTTGGCTTTCTCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGGAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAACTTTTGCATTTTTTGTCTCCTATGAATCCGATTCCATCTCAATTAAGGTATCTGCAATATGTTGCGAGGAGGAATATTTATTCCAAATTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGACACGTTATGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTTCTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCTTTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGTGTACAAGTCCCAGAAAACTTCCACAGAAGTTTACATTGGAGAACAAAAGTAAAATTCTAGAGAAGGAAGGATCTAGTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAAAACAATGAATCTAATTCAGTATTCCGACAGGTGCCTCAATCTCCAGACTCTTTTCCACTCACCCACGACATGTTGCAAGATTCCCCAAATTCAGAGAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTCTCAAACTGCAGCATTGGATGTTTCTCTTGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAAACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCCCTACCTCCTCCTCACTCCACTTTAACTGAATCACTACTTCAGTCTAATAACTTTTCAACTCTACGACCAAATAGAGCTTCACTCACTGAGGAAATAGAAATCTATTCGAAGGATCAAAATCAGTTATCAACCATCATCCCTCCCCAGTCTGTAACCTCTACAATTAGTTCCTCAATGCAGTCTCCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCATAGCTGTTAGAGTTAAAGCTTCTTTGACAACACCCCCTACTTTTCCTTCTACATTAGCTTCCCATCCTACAATTGCATCCTCGGTTCCTCAACCACCACCACCTCCTCCTCCTCCTCCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCGCCTCCTCCTTCTCCTCCTCCTCCAATAGCCATTAGAAATCCTAAAATCTCCTCTCCAGTGCCTCCACCACCACCTCCTCTTCTTATGACTTCCAAACAGATTGAAAGTACTACAGCATCCCCATTTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCACCACCTATTCCTATGACATCCAGGCAGTTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCGCCACCTCTTCCGTCCAGACAGGTTGGAAGTACTTCAACATCTTCACATGTTCCCCCTCCTCCACCACCTCCCGCTTCCACCAAAGGCTCCCCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGCCTTCAAAATCAGGTATAAAGGGACGGAGTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGTTCCTGATCAGCACCAAAAGTCGAGTGGACGTGGTTCAGTTGGCAATAAGCCTGAGAAAGTACAACTGATTGATCACAGACGAGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTCTGGATATTGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGAAGCTCGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGCTGAATCTAAGCTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGCTTGAATTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTCTCTCTAGGAAATGCCTTAAACCAGGGAACAGCAAGGGGTTCTGCTATAGGATTCAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGTTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCAGAATGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTAGTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACCGAAGGTGAAAAATCAAAGACGGGGCACTTGCACAAGAGGACGAGGACCAGACAGTTATCACACTCTCAGATCGAGATTGGCAATGTCAAGTAA 3765 42.58 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQLRYLQYVARRNIYSKFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTSTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDNNSLWSTQVSSLLQCTSPRKLPQKFTLENKSKILEKEGSSPTSKFSPDAAKTEQNNESNSVFRQVPQSPDSFPLTHDMLQDSPNSERSDRTSYSASVGSHSFIDSEGEIDVSHLKTASSSSQTAALDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTLTESLLQSNNFSTLRPNRASLTEEIEIYSKDQNQLSTIIPPQSVTSTISSSMQSPPPPPPPPPSTPPLKDTIAVRVKASLTTPPTFPSTLASHPTIASSVPQPPPPPPPPPTSTVTHKISSPIPSPPPPPPPPSPPPPIAIRNPKISSPVPPPPPPLLMTSKQIESTTASPFIPPPPPPPIPMTSRQVGSTSTSSPVPPPPPPPPIPMTSRQFGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSPVPSAPPPPTLSGRGPSKSGIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPVPDQHQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQLEFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTRTRQLSHSQIEIGNVK 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20671258 20681729 - PI0001188.1 Cmetu02g1753 349765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 649 710 - -
Cmetu02g1753 1254 SUPERFAMILY Formin homology 2 domain (FH2 domain) 852 1222 - -
Cmetu02g1753 1254 Coils Coil 1206 1226 - -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 596 844 - -
Cmetu02g1753 1254 Gene3D Protein tyrosine phosphatase superfamily 14 190 IPR029021 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 418 479 - -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 745 760 - -
Cmetu02g1753 1254 SMART it6_source 839 1252 IPR015425 -
Cmetu02g1753 1254 Pfam C2 domain of PTEN tumour-suppressor protein 193 317 IPR014020 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 412 479 - -
Cmetu02g1753 1254 ProSiteProfiles C2 tensin-type domain profile. 179 318 IPR014020 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 632 648 - -
Cmetu02g1753 1254 Pfam Formin Homology 2 Domain 846 1206 IPR015425 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 721 735 - -
Cmetu02g1753 1254 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 188 318 IPR035892 -
Cmetu02g1753 1254 Gene3D Formin, FH2 domain 838 1216 IPR042201 -
Cmetu02g1753 1254 ProSiteProfiles Formin homology-2 (FH2) domain profile. 839 1231 IPR015425 -
Cmetu02g1753 1254 SMART PTEN_C2_2 173 317 IPR014020 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 603 619 - -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 792 822 - -
Cmetu02g1753 1254 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cmetu02g1753 1254 MobiDBLite consensus disorder prediction 1224 1254 - -
Cmetu02g1753 1254 Gene3D - 191 316 - -
Cmetu02g1753 1254 PANTHER FORMIN-J 699 1232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1753 K28090 - - csv:101221713 2038.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1753 Cmetu-Chr2:20671258 Cmetu04g2809 Cmetu-Chr4:16880725 7.00E-231 dispersed
Cmetu02g1753 Cmetu-Chr2:20671258 Cmetu07g0822 Cmetu-Chr7:23966090 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33