Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1762 ATGGCGGGAGGCAAGATTAAAAAAGAGAAGCCAAAAGCAGCGGCGAAGGCTGCAGCACCGTATCAGGGAGGGATTTCATTCCACAAATCCAAGGGTCAGCATATTCTTAAGAATCCCTTGCTGGTCGACTCTATAGTTCAGAAATCTGGAATTAAGAGCACCGATGTGATCCTTGAGATTGGTCCTGGTACTGGTAATCTCACCAAGAAGCTCCTAGAATGTGGTAAGATGGTTATTGCTGTCGAGCTTGATCCTCGTATGGTTCTTGAGTTGCAGAGGCGGTTTCAAGACACTCCTTACTCTTCTCGCTTGAAGGTTATTCAAGGAGATGTACTCAAGACTGAGCTTCCCTATTTTGATATATGTGTGGCAAATATTCCCTATCAAATATCATCACCTCTCACATTCAAATTGCTAAATCATCAACCTGCTTTTCGGTGCGCGATCATAATGTTCCAAAGGGAATTTGCAATGAGGTTAGTTGCTCAACCTGGGGACAAACTTTACTGCCGTTTGACCGTAAACACCCAACTCCTAGCTCGAGTGTCTCACCTCCTCAAAGTTGGAAAGAACAACTTTCGCCCCCCACCTAAGGTAGACTCGTCTGTAGTTCGAATCGAGCCAAGGAAGCCACGTATTGAGGTGAAGCAAAAGGAGTGGGATGGATTTCTGAGAATCTGTTTCAATCGAAAGAACAAAACTCTTGGTTCAATTTTTAGGCAGAAGAGTGTTCTTTCTTTACTAGAGAAGAACTACAAGACATTGTGTTCACTTAACATCCTTCAGCAAGGTTCTGCAGGTAACGATGATGGTGCCTTCGATAATTCAAATGAGGATCAAAGCATGGAAGTAGATGACGATGGAGATGACGAGGAGATGGATATGGAAGATGGTGATGCTGAAGAAGGGGAAGCTTCTGAATTTAAGGGTAAAGTGATGGGTGTTTTAAAGGAGGGAGATTTTGAAGAAAAGAGGTCTTCTAAACTTACCTTACAAGAGTTCTTATACTTACTTTCTTTGTTCAACAAAGCTGGCATACATTTTTCTTGA 1050 42.67 MAGGKIKKEKPKAAAKAAAPYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYFDICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCSLNILQQGSAGNDDGAFDNSNEDQSMEVDDDGDDEEMDMEDGDAEEGEASEFKGKVMGVLKEGDFEEKRSSKLTLQEFLYLLSLFNKAGIHFS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12793602 12795280 - PI0018175.1 Cmetu02g1762 349774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1762 349 MobiDBLite consensus disorder prediction 279 303 - -
Cmetu02g1762 349 Gene3D Vaccinia Virus protein VP39 27 211 IPR029063 -
Cmetu02g1762 349 PANTHER DIMETHYLADENOSINE TRANSFERASE 9 343 IPR001737 -
Cmetu02g1762 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 22 247 IPR029063 -
Cmetu02g1762 349 SMART rADcneu6 41 210 IPR020598 GO:0000154|GO:0000179|GO:0008649
Cmetu02g1762 349 Pfam Ribosomal RNA adenine dimethylase 26 251 IPR001737 -
Cmetu02g1762 349 Gene3D - 213 349 - -
Cmetu02g1762 349 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 57 84 IPR020596 GO:0000154|GO:0000179|GO:0008649
Cmetu02g1762 349 MobiDBLite consensus disorder prediction 269 306 - -
Cmetu02g1762 349 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 27 345 IPR001737 -
Cmetu02g1762 349 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 26 254 IPR011530 GO:0000179|GO:0006364
Cmetu02g1762 349 CDD AdoMet_MTases 57 139 - -
Cmetu02g1762 349 FunFam rRNA adenine N(6)-methyltransferase 27 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1762 K14191 - - csv:101215363 608.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1762 Cmetu-Chr2:12793602 Cmetu04g1805 Cmetu-Chr4:3985554 2.80E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1056 . . Bda04g00036 . . . Bma09g00094 . . . . Cma07g00458 . Car07g00404 Sed06g1238 Cpe19g00832 . Bhi03g00905 Tan03g2037 Cmetu02g1762 . Hepe04g1559 . . Cla01g01947 Cam01g2035 Cec04g1693 Cco04g1758 Clacu01g2057 Cmu01g1934 Cre04g1608 . . Cone6ag1654 . Lsi01g00637 . . Cme08g00893 Blo05g00813 . . . . Bpe06g00036 . . . . Cmo07g00455 . . . . . . . . . . . . . . . . . . . . . Csa06g03289 Chy02g00607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004481 2 0 1 3 2 1 1 1 1 1 2 2 1 1 1 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 38