Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1832 ATGATGATGATGTTCAACGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTTCAATTGTGGAAGGAGATGCTGTAGCTCCACCAACCGATCCTGAAGTTGTGGTGGAAGATGATTATTCTGATGAAGAGATCGACATGGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGTGAAGCAACGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAATACATGTTGAAGATTATGGAAGTCTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCCGAGAAGGGAAAACCAGTAACCGGGGCATCGGATAATCTGCGAGAGTGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAAGCAGACAATGCAATTCCTGGACGAAACGATGGCTGTAATTCGATCGGTCCAACCCCTCACACCTTGCAGGAACTTCAGGATACCACCTTAGGTTCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGAGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGATTGCCGAAGGACCAAGGTCCTCCGCCCTACAAGAAGCCTCATGACTTGAAGAAAGCTTGGAAAGTAGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAATCCAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATTAACCAAGAGGAGATCTTGGCCCGAGAGCTTTATCCTGATTCTTGCCCGCCTTTGTCTTCCGGTGGGAGCAGTGGATCATTGGTCATTAACGATTGTAGTGAATATGATGTAGAAGGTGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAATCACAGCTCATTCAACTTAGGGATGGACAGAATGAGAGATCGGGTTTCCCTTCGACAACCACCTTATGCAATGAAAGGAGAGGTTACTACAAACTTGGATTTTATGCGAAAGAGGAAACCAACCAGTGATTTGAACATGATGATGGATCAGAAGATCTATACATGTGAGTTCCTCCAATGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACGTCTAGAGACAATCATCAGTTGACCTGCCCATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCGTTCGCCCCGCCCAAGTCAAATCCACCCCCGGTCAGTTCGGTTCCGTCATCTTTCGACCTGTCCACTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAGAACAACTTAAACACTGGTAACAGTGCCACCACGGAGAACCAAAATCTCCCTCAATTAAAGATCCAACCTCAACAAGACGATTACTTCCGCAATCAAGGTCTAATGATCGAGGGTAACTTCTTTGATGGCTCGAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGTCAATTCGACCGATTTAAGCCAATGAATTCGCCTTTCGAAAACAACCACCATCATCACAACAATAACAACAACAACAACTTCCACTTGATGTTTAGCTCTCCATTCGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCAACGTAGCAGCCATCGACACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTAA 1884 45.38 MMMMFNEMGFCDDMDFLSASIVEGDAVAPPTDPEVVVEDDYSDEEIDMDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGSSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMDRMRDRVSLRQPPYAMKGEVTTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSNPPPVSSVPSSFDLSTLGVPEDGQKLISELMSIYDTNIQGNKNNLNTGNSATTENQNLPQLKIQPQQDDYFRNQGLMIEGNFFDGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHHHNNNNNNNFHLMFSSPFDLSTFDYKEEVPNVAAIDTLSKQQDIPLWYH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3563096 3566748 - PI0020242.2 Cmetu02g1832 349844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1832 627 FunFam Ethylene insensitive 3-like 1 169 306 - -
Cmetu02g1832 627 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Cmetu02g1832 627 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 34 606 IPR006957 GO:0003700|GO:0005634
Cmetu02g1832 627 MobiDBLite consensus disorder prediction 336 353 - -
Cmetu02g1832 627 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Cmetu02g1832 627 FunFam Ethylene insensitive 3-like 1 81 159 - -
Cmetu02g1832 627 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cmetu02g1832 627 Coils Coil 48 68 - -
Cmetu02g1832 627 MobiDBLite consensus disorder prediction 332 353 - -
Cmetu02g1832 627 Pfam Ethylene insensitive 3 49 296 IPR047091 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1832 K14514 - - csv:101206055 1189.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1832 Cmetu-Chr2:3563096 Cmetu03g0331 Cmetu-Chr3:8062848 4.60E-199 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1832 . 2 626 EIL Transcription Factor Family AT2G27050 58.9 5.1e-192 667.9
Cmetu03g0331 . 8 507 EIL Transcription Factor Family AT2G27050 62.5 5.5e-170 594.7
Cmetu02g1340 . 44 350 EIL Transcription Factor Family AT2G27050 57.4 9.0e-96 348.2
Cmetu02g1340 . 44 577 EIL Transcription Factor Family AT1G73730 54.5 3.7e-147 518.8
Cmetu02g1832 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.7e-105 378.3
Cmetu03g0331 . 38 335 EIL Transcription Factor Family AT1G73730 61.6 8.5e-104 374.8
Cmetu02g1832 . 3 626 EIL Transcription Factor Family AT3G20770 62.3 2.9e-209 725.3
Cmetu03g0331 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 3.7e-172 602.1
Cmetu02g1340 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cmetu02g1340 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.7e-70 262.7
Cmetu07g0535 . 23 330 EIL Transcription Factor Family AT5G10120 52.9 2.9e-84 309.7
Cmetu02g1340 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.6e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7487 PF04873 EIN3 3.50E-129 No_clan Cmetu TF