Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1853 ATGATTAAATGGCAGGTTGTATTCCCAGCTCTTGATCTACATACAAAAAATGTCATCTCCACGTATTCTTTGGAGCATGAGAGCTTGGATGGCCTCTTCACTTCCATTTCTAAACACTGTGAAGACATCAATGGAGAAAACAAAGATATCTCCAAGCCATTTCAAGAACTGATTTTCTGTTTAGGCACCATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATGAAGGAATTCTCTGCAAGAGAACAGGCGTCGCTTGTGTGGCAATTCATTTGTAGTGTACCAATGATACTATTGGAGGAGCTTTTGCCATGGATGATGTCTTTTCTTCCAGCAGATCAGCAATCAGAAGTCTTAAACTGTCTAAGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTGGAGAGATGTAGAAGTAGAAGATATAAAGTTACAATCATCTCAAGAAAATGGACAGAGCCCTGTTGATAGCCTTCACATTTGGCATGGTGCCATTATGAAGGATCTAAAGGAAGTATTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCACTTTCTAACCTTGATACCTTACTTGTCCAAATAAAGTTCTTGGCTGATGTAATTCTATTTTACAGAAAGGCATCAGAGAAATTCTTTCGTCCTGTGTTCAATCAACGTTCAGACGTCTGCTTAATCACCTCTGACCAATCGTTTCTTAGTGATGGTCATATTGAAGGCTTACAGCAATTGCTACAGCATGGTGCTCAAGATACCATACCTTTGAGTATTTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTCATACGAGTCAGCAAACAGTTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAACTCCTATATATGAGCCTCCGAACCTTACCACTTGGACTCTTGAAGTGTATAATTACTTGGTTTTCAGCTCACTTATCTGAGGAAGAATTGAGATCTGTACTTCAGGCCAAATCAGAGGGAGATTTTTGGGTTAACAATGCACTTGTCGCCCTCTTGCGTGACTGGTTTCGAATTGGCTACTCAGGAAAAACCTCGGTTGAACAATTTGGACAAGATTTGCAGAAAATTTTCAAGACCAGAAGCTATATTTTGCATAAACAGGTGGAACAAATGAAAGAAGTTGCTGGAACTTCATCGTTGAGCTCAAATGCTCAATCTTATAAGGGGGAAAGCTCTGAGGAAATGGGATTACTTTCTACCAACAAGGATAAGAGCTTCATGTCAAATTCGTCACCAACTGTTTCTTGCACTGCTTCGGTTTATGGAACATCTTATTCTAGTGGAATCAATCTGCAAATACATTTTCCAGGAACAGTGAAGGTACCATGTCCATATACTAAACATCTTTACGAAGAACACCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGAATCTTGACAGAGTTTAGAAGGCGGTTCCAATTGGTGAAATTTTTATATCAGATCCATACAGATGCCGAGGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGATCATAAACTGGAAGTACACCAATTCAGTAAAATATCCTTCATTCTTAATGAAATGTCTGAATTGCACTCTTCAAATTTTTATGTCAATGCTGATAGGAAAACGTTTAGTCACCGGCAGCTCTGTTTGGAACTTCATGATATGTGCAAATCTTTGCACAAGTCTCTTTCTGACCACGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTTAGAGAATTCTTCACGATTGACGAACAAGAAACTCTTATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGTCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGAAATACCATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAATGTGGCAGCTGAGGTGAAAACTATTACTCCCTTACTGACTTCAGATCCTTTGGAAATCATCTCAAAATATTTATCCAAGGAAGTAACAGATGTATGTGAAGGAAATCTTTTTGGAAAACCCATCAGCTCAAAACAGAAGGAACATCAATTTCATGTTACCAATGCCGACAAGACAGAAATGTTCAGTTTGAATGACGAGGCAAAAGATTTTGATGGCGACCAACATGATGAAACATTTGAAGAATCCACAAAACTTGTTTCTCATGGGGTTAGTGATAGGGATGCTGATGGTATCACAGAACATGAGACAGAAACAGAACGACCTGAAGAAGGTAAGAAATCAAGCCAAAATGATCACCTTCTTACAATTAGTCAAGAAGAACTAGAGGCTGTAATAAGAAGGGTATCAAGAGACTCATCCTTAGACTCCAAAAGTAAATCTCACTTGATACAGAATTTGCTAATGAGCCGTTGGATTGCAAAGCACCATTCCCAAGTAGAGACAAACATTACATCAGAAAACCAAGGATATGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTATATACCTGCATACATTGTCACGACGAGGCTACCGATCACTCATTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCCATTGGAAAGACATGTTCAACTCTCTCTTGTGGTAATTTTTCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGATGATTCAAGAGATATCTACCACTGTCCATACTGCAACCTATGCCGAGTCGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAATGCCTGTATGTCTCGTGCACTCTCAGTTCATATATGCAGAGAGAAATGCCTAGAAGACAACTGCCCTATTTGCCATGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACTCATTATACCTGCCCTATCTGTAGCAAGTCGCTAGGAGACATGCAGGTGTACTTTGAGATGTTGGATGCATTGTTGGCAGAAGAGAAAATTCCAGAAGAGTATTCTGGAAAAACTCAGGTCATATTGTGTAATGACTGCGAGAAGCGTGGAACGGCACCGTTCCACTGGTTGTACCATAAATGTTCCTATTGTGGTTCATATAATACTAGGGTTTTGTAA 3465 39.65 MIKWQVVFPALDLHTKNVISTYSLEHESLDGLFTSISKHCEDINGENKDISKPFQELIFCLGTIQTTICQHMIKEEQQVFPLLMKEFSAREQASLVWQFICSVPMILLEELLPWMMSFLPADQQSEVLNCLRDVVPNEKLLQEVIMSWLGSTEKPWRDVEVEDIKLQSSQENGQSPVDSLHIWHGAIMKDLKEVLKCLFQVKSCTSTALSNLDTLLVQIKFLADVILFYRKASEKFFRPVFNQRSDVCLITSDQSFLSDGHIEGLQQLLQHGAQDTIPLSIFLEKLCWDMESFVIRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIITWFSAHLSEEELRSVLQAKSEGDFWVNNALVALLRDWFRIGYSGKTSVEQFGQDLQKIFKTRSYILHKQVEQMKEVAGTSSLSSNAQSYKGESSEEMGLLSTNKDKSFMSNSSPTVSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEEHPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFRRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSKISFILNEMSELHSSNFYVNADRKTFSHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFTIDEQETLIGAIFGRTKAEILQDMIPWQMSYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHENVAAEVKTITPLLTSDPLEIISKYLSKEVTDVCEGNLFGKPISSKQKEHQFHVTNADKTEMFSLNDEAKDFDGDQHDETFEESTKLVSHGVSDRDADGITEHETETERPEEGKKSSQNDHLLTISQEELEAVIRRVSRDSSLDSKSKSHLIQNLLMSRWIAKHHSQVETNITSENQGYAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLYTCIHCHDEATDHSLDRKSITKMMCMNCLVVQPIGKTCSTLSCGNFSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHICREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPEEYSGKTQVILCNDCEKRGTAPFHWLYHKCSYCGSYNTRVL 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23890973 23896047 - PI0028809.1 Cmetu02g1853 349865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1853 1154 MobiDBLite consensus disorder prediction 792 842 - -
Cmetu02g1853 1154 ProSiteProfiles Zinc finger CTCHY-type profile. 984 1047 IPR017921 -
Cmetu02g1853 1154 ProSiteProfiles Zinc finger CHY-type profile. 912 981 IPR008913 GO:0008270
Cmetu02g1853 1154 Gene3D - 1119 1154 - -
Cmetu02g1853 1154 CDD Hr-like 508 651 - -
Cmetu02g1853 1154 Pfam Ring finger domain 1046 1089 IPR001841 -
Cmetu02g1853 1154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1041 1092 IPR013083 -
Cmetu02g1853 1154 CDD Hr-like 5 81 - -
Cmetu02g1853 1154 Gene3D nmb1532 protein domain like 5 101 - -
Cmetu02g1853 1154 Gene3D nmb1532 protein domain like 501 672 - -
Cmetu02g1853 1154 SMART ring_2 1048 1089 IPR001841 -
Cmetu02g1853 1154 SUPERFAMILY CHY zinc finger-like 910 975 IPR037274 GO:0008270
Cmetu02g1853 1154 Pfam Zinc-ribbon 1095 1152 IPR039512 -
Cmetu02g1853 1154 MobiDBLite consensus disorder prediction 792 841 - -
Cmetu02g1853 1154 FunFam Zinc finger protein-related isoform 1 1043 1092 - -
Cmetu02g1853 1154 ProSiteProfiles Zinc finger RING-type profile. 1048 1090 IPR001841 -
Cmetu02g1853 1154 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 549 1154 - -
Cmetu02g1853 1154 Pfam CHY zinc finger 919 994 IPR008913 GO:0008270
Cmetu02g1853 1154 SUPERFAMILY RING/U-box 1035 1094 - -
Cmetu02g1853 1154 SUPERFAMILY Zinc hairpin stack 985 1039 IPR037275 -
Cmetu02g1853 1154 CDD RING-H2_Pirh2-like 1047 1090 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1853 K16276 - - csv:101212459 2272.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1853 Cmetu-Chr2:23890973 Cmetu10g1444 Cmetu-Chr10:20523768 5.50E-198 dispersed
Cmetu02g1853 Cmetu-Chr2:23890973 Cmetu02g0752 Cmetu-Chr2:22674010 3.70E-210 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34