Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1944 ATGGCAGAAATGAAGCAGCCTGTGGCTATAATTGGAGCTGGAATTAGCGGTCTAATCGCTTGCAAATATGTAGCTCAAAAGGGGTTACATCCTGTCGTTTACGAGGCAGAAGACGGTATCGGAGGGGTGTGGGCTCGAACCATCAACTCAACCAAACTTCAAAACCACAAAAGCACTTATGAATTCTGTGACTTCCCTTGGCCTTCTTCTGTTCAAACTGATTATCCTTCTCATCAACAAGTTCTTGACTACCTCCATTCTTATGCACTTCATTTTGATCTCCTTCACTTCATCAACTTCAATTCTCGTGTTCTCAGTATCGATTATGATACCGATGTAGTTGATGATACAGAGAGTTACTCATCTCAGCTTTGGGGAGGAACTGGCCTCCCCTTTGCTAAGGAGCCTAGATGGATCCTTGAAGTTCAAAACACTAAAACTAATACGGTTCAGGTTCATCGAGTTGGGTTTGTGATATTGTGCATGGGGAAATACAGTGGGATGCCATACATACCAGAGTTCCCACCAAATGAAGGCCCAGAAGTGTTTCGTGGGAAAGTGCTTCACTCAATGGATTATGCTTCCATCTCTAAGAACAAAATAGGAGGTGTCTCAGCTTGCACTCAGTTAGTGAAAGGCAAAAAAATTGCAGTTGTTGGATCTCTCAAATCAGCCATGGATATAGCAATGGAATGTGCCGAAGCAAATGGAGCGGAAAACCCATGCACGTTGCTTGTAAGAAATCCCCATTGGTTGACTCCTTCTGACCAAGCATGGGGTATCGATATAGGTCTTTTGTACAATAGTCGTTTCTCTGAACTACTGGTCCATAAACCTGGCGAAAACTTCCTATTCAGTGTCATCGCCACCTTACTTTCACCGATGAGATGGGGTATCTCAAAATTTGTGGAGAGCTACCTACGATGGAAACTTCCATTAAAGAAACATGGAATGCTACCAAAACATAGCTTTTTTGTAGAGGTTTCTTCTTGCCAAGTTGCAACCATCCCTGAAAAATTCTACCAAAAAGTGGAAGAAGGTAGCATTGTCTTAAGAAAATCCAACTCCTTCACCTTCTTCAAGAAAGGTCTCGTCATCGACGACGACGACACCCAACCTGTCGAAGCTGACGTCGTCATTCTCGCCACCGGATACCAAGGCAATGAAAAACTCAAATCCATCTTCAAATCTACCACTTTCCAAAAATACATCTCCACCTCCCCAACCTCCATCATGCCTCTATACAGACAGGTGATTCAGCCAAGGATTCCTCAGCTTGGAGTGATAGGGTACGCAGAGGGAATATCAGACTTGTTTAGCTCGGACATGAGATGTCAATGGCTAGTACATGTGCTCAATGGAAGCTTCAAATTACCAAGCATAAAAGAAATGGAGGAAGAAATAAGGTTGTGGGAGATGAACATGAAAGAATATGCAGGGGAATACTTTTGGAGATCTTGTGTGGGAATTAATAATATTTGGTACAATGATCAACTTTGCAAAGATATGGGACGAAAGTACTTAAGGAAGAACTCCATTTTAGCTGAGCTTTTTCATCCTTATCTCCCTTCCGATTATGCAACTCTCAGCTATGAGTAA 1599 42.59 MAEMKQPVAIIGAGISGLIACKYVAQKGLHPVVYEAEDGIGGVWARTINSTKLQNHKSTYEFCDFPWPSSVQTDYPSHQQVLDYLHSYALHFDLLHFINFNSRVLSIDYDTDVVDDTESYSSQLWGGTGLPFAKEPRWILEVQNTKTNTVQVHRVGFVILCMGKYSGMPYIPEFPPNEGPEVFRGKVLHSMDYASISKNKIGGVSACTQLVKGKKIAVVGSLKSAMDIAMECAEANGAENPCTLLVRNPHWLTPSDQAWGIDIGLLYNSRFSELLVHKPGENFLFSVIATLLSPMRWGISKFVESYLRWKLPLKKHGMLPKHSFFVEVSSCQVATIPEKFYQKVEEGSIVLRKSNSFTFFKKGLVIDDDDTQPVEADVVILATGYQGNEKLKSIFKSTTFQKYISTSPTSIMPLYRQVIQPRIPQLGVIGYAEGISDLFSSDMRCQWLVHVLNGSFKLPSIKEMEEEIRLWEMNMKEYAGEYFWRSCVGINNIWYNDQLCKDMGRKYLRKNSILAELFHPYLPSDYATLSYE 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20322613 20327036 - PI0017806.1 Cmetu02g1944 349956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1944 532 Gene3D - 3 274 IPR036188 -
Cmetu02g1944 532 Coils Coil 461 481 - -
Cmetu02g1944 532 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cmetu02g1944 532 SUPERFAMILY FAD/NAD(P)-binding domain 4 288 IPR036188 -
Cmetu02g1944 532 PIRSF FMO 4 516 IPR000960 GO:0050660|GO:0050661
Cmetu02g1944 532 Gene3D - 318 519 IPR036188 -
Cmetu02g1944 532 FunFam Flavin-containing monooxygenase 364 518 - -
Cmetu02g1944 532 FunFam Flavin-containing monooxygenase 4 179 - -
Cmetu02g1944 532 Pfam Flavin-binding monooxygenase-like 7 506 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmetu02g1944 532 SUPERFAMILY FAD/NAD(P)-binding domain 366 531 IPR036188 -
Cmetu02g1944 532 PANTHER DIMETHYLANILINE MONOOXYGENASE 8 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1944 K00485 - - csv:101216337 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1944 Cmetu-Chr2:20322613 Cmetu11g2380 Cmetu-Chr11:13809223 3.00E-159 dispersed
Cmetu02g1846 Cmetu-Chr2:20279465 Cmetu02g1944 Cmetu-Chr2:20322613 3.20E-294 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g233 . . . . . . . . . . Cma02g00291 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0637 Cmo02g00285 . . . . . . . Bhi10g01241 Tan05g1063 Cmetu02g1944 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015197 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 1 0 0 1 1 0 0 0 0 1 0 1 0 0 14