Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1958 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGTAAATGACTCTGCAAGAAAGGCGACATACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCTCAACCCGAGCTCTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAAGAGACGTTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACTGCTGCAAAGGGGCTGCATGGACTTAACATGCTTGATTTGAACGACCTAGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAAAGCCTTCTCCTTCACAACCTCAAGCTCAGGTTCAGGCTCAAGCGCAGGCTCAGGCTCAGGCTCAGGCTCCACCGACTCAATCAAATGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAATAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 648 44.44 MTRKKVKLAYIVNDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSPSQPQAQVQAQAQAQAQAQAPPTQSNGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 194504 195312 + PI0013408.1 Cmetu02g1958 349970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1958 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cmetu02g1958 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Cmetu02g1958 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmetu02g1958 215 MobiDBLite consensus disorder prediction 157 191 - -
Cmetu02g1958 215 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cmetu02g1958 215 MobiDBLite consensus disorder prediction 157 186 - -
Cmetu02g1958 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmetu02g1958 215 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Cmetu02g1958 215 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cmetu02g1958 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmetu02g1958 215 Coils Coil 87 114 - -
Cmetu02g1958 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmetu02g1958 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmetu02g1958 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1958 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1958 Cmetu-Chr2:194504 Cmetu12g0158 Cmetu-Chr12:12245251 8.80E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7492 PF00319 SRF-TF 1.30E-17 No_clan Cmetu TF