Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g1969 ATGGGTGGTGTTACTTCTTCCATGGCTGCTAAATTCGCCTTCTTCCCTCCTAATCCACCCTCTTACAAGATTCTTAAAGACCAACCAACTGGTCTTCTTCTCTTGGACCCTTTTCCCCACCGTGAAAATGTCGATGTCTGGAAACTTCCCACGCGTAAAGGCAATGAGATCGTTGCTGTTTACATCCGTTACCCTATGGCTACTTCCACGCTTCTTTATTCTCATGGAAATGCTGCTGATGTTGGTCAGATGTATGAGCTCTTCATTGAGCTTAGCATCCATTTGCGCGTTAATCTTCTTGGGTACGATTACTCTGGATACGGGCAGTCCACTGGAAAGCCAAGTGAGCACAATACTTATGCAGATATTGAAGCTGCATACAAGTGTCTTGAGGAGAAGTATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGACCTTGCTGCACGTTTGCCCCGACTACGAGCAGTTGTCCTTCATAGTCCTATATTATCAGGATTGAGAGTCATGTATCCAGTGAAACGCACATACTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAGTGCCCCGTGTTGGTAATTCATGGAACCTCCGACGACGTTGTTGATTTCTCTCACGGCAAACAGCTTTGGGAGTTGTGTCAAGAGAAATATGAACCCTTATGGCTGAAAGGAGGAAACCATTGTGATCTTGAACTCTTCCCAGAATACATCAGGCATCTCAAGAAATTCGTATCCACCGTCGAGAGATCGCCTTCACGAAGGAATGGTTCAAGGAAAAGCACAGACCGAATGGAGCAATCAAGAAGGAGCACAGATTGTTTCGAGGCCCCACGAAGGAGCACAGACAGACGAGAGAAGCCTAGGAAAAGCGTTGATAGGCTAGACAAATCGAGACCACAAGGATACAAGTTCAACAACATCGAGAAGCTAGAGAAACTAAAAATCTCAATTGACCAAGTAGAGAGATCAAGAAGAAGTGTGGAATTCTATGAGAAACCGAGAAGAAGCATCGACCAGCAGTTTGAAAAAGCTCGAAAGAGCGTCGATTGGTTGGATAGAATTCGTGCCGGGTAG 1116 44.62 MGGVTSSMAAKFAFFPPNPPSYKILKDQPTGLLLLDPFPHRENVDVWKLPTRKGNEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSRRNGSRKSTDRMEQSRRSTDCFEAPRRSTDRREKPRKSVDRLDKSRPQGYKFNNIEKLEKLKISIDQVERSRRSVEFYEKPRRSIDQQFEKARKSVDWLDRIRAG 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24716139 24719307 + PI0023571.1 Cmetu02g1969 349981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g1969 371 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Cmetu02g1969 371 Coils Coil 120 140 - -
Cmetu02g1969 371 SUPERFAMILY alpha/beta-Hydrolases 5 260 IPR029058 -
Cmetu02g1969 371 Gene3D alpha/beta hydrolase 42 260 IPR029058 -
Cmetu02g1969 371 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 5 263 - -
Cmetu02g1969 371 MobiDBLite consensus disorder prediction 262 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g1969 K01076 - - csv:101220027 746.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1969 Cmetu-Chr2:24716139 Cmetu03g0426 Cmetu-Chr3:5412322 3.00E-105 dispersed
Cmetu06g1574 Cmetu-Chr6:29972613 Cmetu02g1969 Cmetu-Chr2:24716139 7.30E-94 transposed
Cmetu07g1774 Cmetu-Chr7:18818875 Cmetu02g1969 Cmetu-Chr2:24716139 8.10E-121 transposed
Cmetu09g1915 Cmetu-Chr9:20379735 Cmetu02g1969 Cmetu-Chr2:24716139 3.50E-125 transposed
Cmetu02g1969 Cmetu-Chr2:24716139 Cmetu06g2290 Cmetu-Chr6:20436942 1.30E-143 wgd
Cmetu02g1969 Cmetu-Chr2:24716139 Cmetu09g1176 Cmetu-Chr9:18593826 4.30E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121