Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g2020 ATGGATCAGCAAGGTCATGGCCAGCCTCCATCCATGGGAGCGGTTAGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGCCTGTAGGCCCAACTTCGGGATCTGTTGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAAACTTTTTGGGTAAACCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCCGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTTGTTGATATAGTGCCGAGGGAGGATCTGAAAGATGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTCATGGACCCAGCTATGTATGCTCCACAATCACATCCTTATATGGCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 780 46.54 MDQQGHGQPPSMGAVSSGGQIAYGSNLYHPNQMPVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 927508 930646 - PI0010727.1 Cmetu02g2020 350032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g2020 259 MobiDBLite consensus disorder prediction 26 57 - -
Cmetu02g2020 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Cmetu02g2020 259 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Cmetu02g2020 259 SUPERFAMILY Histone-fold 70 175 IPR009072 GO:0046982
Cmetu02g2020 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 198 - -
Cmetu02g2020 259 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g2020 K08066 - - csv:101209664 461.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1692 Cmetu-Chr1:2299711 Cmetu02g2020 Cmetu-Chr2:927508 4.60E-63 dispersed
Cmetu02g0400 Cmetu-Chr2:24962690 Cmetu02g2020 Cmetu-Chr2:927508 4.00E-52 dispersed
Cmetu02g2020 Cmetu-Chr2:927508 Cmetu07g0820 Cmetu-Chr7:4841291 3.20E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0400 . 35 180 CCAAT-HAP5 Transcription Factor Family AT3G48590 92.6 1.2e-70 263.5
Cmetu02g2020 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.9e-53 205.7
Cmetu01g1692 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 8.4e-53 204.1
Cmetu02g2020 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 7.3e-57 217.6
Cmetu01g1692 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.3e-49 191.0
Cmetu02g0400 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.0 3.9e-42 168.7
Cmetu02g2020 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 6.0e-61 231.1
Cmetu01g1692 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.3e-52 202.6
Cmetu02g0400 . 34 180 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.8 2.1e-50 196.1
Cmetu02g0400 . 35 181 CCAAT-HAP5 Transcription Factor Family AT5G63470 82.4 1.5e-63 240.0
Cmetu02g2020 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 7.1e-50 194.5
Cmetu01g1692 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cmetu01g1692 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.4e-64 242.3
Cmetu02g2020 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 7.4e-50 194.1
Cmetu02g0400 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.0 2.2e-49 192.6
Cmetu03g0544 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 3.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7496 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cmetu TF