Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g2031 ATGAAACAGGAGTTGTCATGTATGATTTCAAAAGCCAGGACGAATGCAGTTGGAGAAACTTTAGATTCAAGTTGCATCACTTGTCCAGTCCCTGCTAATGGATGTATTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGCGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCAGAAAATGAGGCAGCCATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACAAAATTCACTATTGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATTGTTCTGAAAGCACACAAACCTCTGCCAGTCCCTCCACAGAAAAGGCACGTAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGCTGAACAGATTGGTCATACCAAAGAAGTACGCTGTTAAGTACTTCCCTCGTATATCAGCTAGTACAATAGAAAATGTAGAGTGCGTTGATGATGATTGCGACATGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACTCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTATGAAGCAGCAAAGTCAAGTGATTCTAAAACTACATTCTGTGTGGTAGATGTTAAAAACCGTGACAACGGTGGTGGCCTGGTTGAGAATGAAACCACATGTAACGAATTGCAGCTCAATTTGAGGCATGTAGAAGTTGAGGAATCGGTGTCACCTAAGCACGTTGTCGATGAACTAAAAGATGATCGTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 40.2 MKQELSCMISKARTNAVGETLDSSCITCPVPANGCIRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDCSESTQTSASPSTEKARNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPRISASTIENVECVDDDCDMQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLYEAAKSSDSKTTFCVVDVKNRDNGGGLVENETTCNELQLNLRHVEVEESVSPKHVVDELKDDREVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20622173 20623192 + PI0003139.1 Cmetu02g2031 350043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g2031 339 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Cmetu02g2031 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Cmetu02g2031 339 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cmetu02g2031 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cmetu02g2031 339 Pfam B3 DNA binding domain 167 265 IPR003340 GO:0003677
Cmetu02g2031 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Cmetu02g2031 339 CDD B3_DNA 166 278 IPR003340 GO:0003677
Cmetu02g2031 339 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Cmetu02g2031 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Cmetu02g2031 339 SMART B3_2 167 285 IPR003340 GO:0003677
Cmetu02g2031 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
Cmetu02g2031 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 338 IPR044800 GO:0003700
Cmetu02g2031 339 Gene3D - 162 287 IPR015300 -
Cmetu02g2031 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g2031 K09287 - - csv:101212246 649.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g2031 Cmetu-Chr2:20622173 Cmetu09g0370 Cmetu-Chr9:15415168 3.30E-42 dispersed
Cmetu02g2031 Cmetu-Chr2:20622173 Cmetu10g0653 Cmetu-Chr10:20200213 3.50E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2519 . 1 164 RAV Transcription Factor Family AT2G36080 58.5 3.5e-48 188.3
Cmetu11g1435 . 93 205 RAV Transcription Factor Family AT2G36080 69.8 1.1e-41 166.8
Cmetu09g0622 . 48 159 RAV Transcription Factor Family AT2G36080 68.7 7.9e-40 160.6
Cmetu07g2066 . 56 167 RAV Transcription Factor Family AT2G36080 69.8 1.0e-39 160.2
Cmetu10g0653 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 4.3e-38 154.8
Cmetu09g0622 . 47 165 RAV Transcription Factor Family AT2G46870 85.8 3.3e-57 219.2
Cmetu11g1435 . 86 334 RAV Transcription Factor Family AT2G46870 52.4 1.3e-53 207.2
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cmetu04g2519 . 35 155 RAV Transcription Factor Family AT2G46870 63.7 7.8e-38 154.8
Cmetu04g2519 . 32 166 RAV Transcription Factor Family AT3G11580 69.3 2.9e-45 179.1
Cmetu09g0622 . 48 161 RAV Transcription Factor Family AT3G11580 60.8 3.1e-39 159.1
Cmetu11g1435 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 3.1e-39 159.1
Cmetu07g2066 . 59 167 RAV Transcription Factor Family AT3G11580 64.5 8.9e-39 157.5
Cmetu09g0622 . 49 167 RAV Transcription Factor Family AT3G61970 80.3 2.8e-53 206.1
Cmetu11g1435 . 94 213 RAV Transcription Factor Family AT3G61970 77.4 4.7e-48 188.7
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cmetu04g2519 . 40 155 RAV Transcription Factor Family AT3G61970 64.7 5.2e-39 158.7
Cmetu09g0622 . 51 166 RAV Transcription Factor Family AT4G01500 68.3 3.3e-42 169.5
Cmetu11g1435 . 87 205 RAV Transcription Factor Family AT4G01500 65.6 3.6e-41 166.0
Cmetu07g2066 . 60 192 RAV Transcription Factor Family AT4G01500 56.0 7.5e-39 158.3
Cmetu04g2519 . 40 258 RAV Transcription Factor Family AT5G06250 51.7 9.9e-50 194.1
Cmetu07g2066 . 60 167 RAV Transcription Factor Family AT5G06250 69.7 4.9e-41 165.2
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cmetu11g1435 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 2.1e-39 159.8
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 7.4e-37 151.4
Cmetu02g2031 . 45 339 RAV Transcription Factor Family AT1G50680 53.1 1.5e-82 303.5
Cmetu02g0836 . 47 266 RAV Transcription Factor Family AT1G50680 61.9 1.9e-77 286.6
Cmetu02g2031 . 41 339 RAV Transcription Factor Family AT1G51120 51.8 3.8e-81 298.9
Cmetu02g0836 . 52 266 RAV Transcription Factor Family AT1G51120 64.0 3.0e-78 289.3
Cmetu10g0653 . 22 343 RAV Transcription Factor Family AT1G13260 66.1 2.5e-106 382.5
Cmetu09g0370 . 1 291 RAV Transcription Factor Family AT1G13260 61.8 7.2e-93 337.8
Cmetu09g0622 . 52 159 RAV Transcription Factor Family AT1G13260 71.6 8.6e-38 154.8
Cmetu11g1435 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 4.3e-37 152.5
Cmetu04g2519 . 40 156 RAV Transcription Factor Family AT1G13260 66.7 4.3e-37 152.5
Cmetu10g0653 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 8.5e-99 357.5
Cmetu09g0370 . 34 291 RAV Transcription Factor Family AT3G25730 65.2 4.4e-87 318.5
Cmetu10g0653 . 1 344 RAV Transcription Factor Family AT1G68840 61.2 1.2e-111 400.2
Cmetu09g0370 . 1 294 RAV Transcription Factor Family AT1G68840 59.1 1.4e-91 333.6
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT1G68840 70.3 2.3e-38 156.8
Cmetu04g2519 . 40 158 RAV Transcription Factor Family AT1G68840 67.5 3.0e-38 156.4
Cmetu11g1435 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 8.8e-38 154.8
Cmetu10g0653 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 8.5e-99 357.5
Cmetu09g0370 . 34 291 RAV Transcription Factor Family AT3G25730 65.2 4.4e-87 318.5
Cmetu02g2031 . 41 339 RAV Transcription Factor Family AT1G51120 51.8 3.8e-81 298.9
Cmetu02g0836 . 52 266 RAV Transcription Factor Family AT1G51120 64.0 3.0e-78 289.3
Cmetu04g2519 . 32 166 RAV Transcription Factor Family AT3G11580 69.3 2.9e-45 179.1
Cmetu09g0622 . 48 161 RAV Transcription Factor Family AT3G11580 60.8 3.1e-39 159.1
Cmetu11g1435 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 3.1e-39 159.1
Cmetu07g2066 . 59 167 RAV Transcription Factor Family AT3G11580 64.5 8.9e-39 157.5
Cmetu09g0622 . 51 166 RAV Transcription Factor Family AT4G01500 68.3 3.3e-42 169.5
Cmetu11g1435 . 87 205 RAV Transcription Factor Family AT4G01500 65.6 3.6e-41 166.0
Cmetu07g2066 . 60 192 RAV Transcription Factor Family AT4G01500 56.0 7.5e-39 158.3
Cmetu04g2519 . 1 164 RAV Transcription Factor Family AT2G36080 58.5 3.5e-48 188.3
Cmetu11g1435 . 93 205 RAV Transcription Factor Family AT2G36080 69.8 1.1e-41 166.8
Cmetu09g0622 . 48 159 RAV Transcription Factor Family AT2G36080 68.7 7.9e-40 160.6
Cmetu07g2066 . 56 167 RAV Transcription Factor Family AT2G36080 69.8 1.0e-39 160.2
Cmetu10g0653 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 4.3e-38 154.8
Cmetu04g2519 . 40 258 RAV Transcription Factor Family AT5G06250 51.7 9.9e-50 194.1
Cmetu07g2066 . 60 167 RAV Transcription Factor Family AT5G06250 69.7 4.9e-41 165.2
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cmetu11g1435 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 2.1e-39 159.8
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 7.4e-37 151.4
Cmetu09g0622 . 47 165 RAV Transcription Factor Family AT2G46870 85.8 3.3e-57 219.2
Cmetu11g1435 . 86 334 RAV Transcription Factor Family AT2G46870 52.4 1.3e-53 207.2
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cmetu04g2519 . 35 155 RAV Transcription Factor Family AT2G46870 63.7 7.8e-38 154.8
Cmetu02g2031 . 45 339 RAV Transcription Factor Family AT1G50680 53.1 1.5e-82 303.5
Cmetu02g0836 . 47 266 RAV Transcription Factor Family AT1G50680 61.9 1.9e-77 286.6
Cmetu09g0622 . 49 167 RAV Transcription Factor Family AT3G61970 80.3 2.8e-53 206.1
Cmetu11g1435 . 94 213 RAV Transcription Factor Family AT3G61970 77.4 4.7e-48 188.7
Cmetu10g0653 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cmetu04g2519 . 40 155 RAV Transcription Factor Family AT3G61970 64.7 5.2e-39 158.7
Cmetu10g0653 . 22 343 RAV Transcription Factor Family AT1G13260 66.1 2.5e-106 382.5
Cmetu09g0370 . 1 291 RAV Transcription Factor Family AT1G13260 61.8 7.2e-93 337.8
Cmetu09g0622 . 52 159 RAV Transcription Factor Family AT1G13260 71.6 8.6e-38 154.8
Cmetu11g1435 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 4.3e-37 152.5
Cmetu04g2519 . 40 156 RAV Transcription Factor Family AT1G13260 66.7 4.3e-37 152.5
Cmetu10g0653 . 1 344 RAV Transcription Factor Family AT1G68840 61.2 1.2e-111 400.2
Cmetu09g0370 . 1 294 RAV Transcription Factor Family AT1G68840 59.1 1.4e-91 333.6
Cmetu09g0622 . 51 159 RAV Transcription Factor Family AT1G68840 70.3 2.3e-38 156.8
Cmetu04g2519 . 40 158 RAV Transcription Factor Family AT1G68840 67.5 3.0e-38 156.4
Cmetu11g1435 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 8.8e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7498 PF02362 B3 2.60E-24 CL0405 Cmetu TF