Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0001 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCAATTGAACCTTTTATGAAAGTTGCTTCCTCTTCTTATTTTCCTTCTTCTTTTCCGGATTTCTCTTTCTCCTCTTCTTCTTCCTCTTCTTCTTCTATCCAAACAGAGTCTACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCAATGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCACCTTCTATTGGACTTAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTCTGGGGACAGATCAACAACCAGGTAGTAAGAAATCAGAGCAACACCGCCAGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTGGGATCTCCACCGAAATCGACGAAACTATATCGAGGCGTGAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATCCGTCTTCCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCTTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCATGGCTCCTCCGTCGGTGGCGATTTTGGCGAGTACAAACCGCTACACTCCGCCGTCGACGCTAAACTCGAAGCCATCTGCCAAACCTTGGCCGAGTCGCAGAAACAGGGGAAATCGGATCGGAGAAAGTCGAAGTCATCTGGTTCTTCAACCATCGCATCAGAACCTCAGGCCCCAACTGTGATCGATTCCGACGACGATCTGAAACCGGCGGAAGCTGGATCAAGTGGATCAGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCACCGGTTTCGGCCGAGAGCGACGAGTCAGCAGGGTCTTCGCCGTTATCAGATCTGACGTTCCAGGATACGACGGATTCGGCATGGGAACAAGCTACAGAAAGCTGTATGTTGCAGAAATATCCATCGGAAATCGATTGGGCTTCCATATTCACAAATTGA 1086 48.99 MAALMDLYGCREFQSDPFGGELMEAIEPFMKVASSSYFPSSFPDFSFSSSSSSSSSIQTESTSYPSDCSPPMTHLFSNGFSGQDFHGVEQSPSIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVVRNQSNTARNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTIASEPQAPTVIDSDDDLKPAEAGSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFQDTTDSAWEQATESCMLQKYPSEIDWASIFTN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5070229 5072438 - PI0003577.1 Cmetu03g0001 350145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0001 361 CDD AP2 158 218 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700|GO:0006355
Cmetu03g0001 361 ProSiteProfiles AP2/ERF domain profile. 159 216 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Cmetu03g0001 361 MobiDBLite consensus disorder prediction 252 335 - -
Cmetu03g0001 361 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 SMART rav1_2 159 222 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 MobiDBLite consensus disorder prediction 300 335 - -
Cmetu03g0001 361 PRINTS Ethylene responsive element binding protein signature 182 198 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 PRINTS Ethylene responsive element binding protein signature 160 171 IPR001471 GO:0003700|GO:0006355
Cmetu03g0001 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 359 - -
Cmetu03g0001 361 FunFam Ethylene-responsive transcription factor 2 158 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0001 K09286 - - csv:101222833 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0001 Cmetu-Chr3:5070229 Cmetu08g0873 Cmetu-Chr8:21264636 1.20E-66 dispersed
Cmetu03g0001 Cmetu-Chr3:5070229 Cmetu07g1619 Cmetu-Chr7:19241356 4.40E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7504 PF00847 AP2 4.80E-15 CL0081 Cmetu TF