Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0027 ATGGCAAGCCCCTTACCATTGTGCCACACTTATTACTTTTTCATCATAATGGATTCAAATGCCTCTCAATTAGACTCCCAAGAGCAAGCACCTAATGAAGCACTTCCTTTTCTCCACACTTCCAAATTAACCCATAAAATCCTATTCGTACCATCCAAATTTATTTGGCCAAAAGGGGATTTAGTAGAAGCTTATGAAAAGCTAAGTGAACCACATGTGGATCTTGAGGGCTTCCTCAAGGGCGATAAAAAGGCAACCATTGAAGCTTCCCAGCTCGTGAGGAAAGCCTGCTTGAAACATGGCTTCTTCCAAGTTATTAACCATGGCGGCCTCTCAATCCCACCCTGCCAAAATGTGGGCTTTTCCACTGCTCATTCAAATCGCTTTTCCTCAAAGCTGCCATGGAAGGAAACTTTCTCTTTTGGGTTTGACCATTGCAACAGGTTCAATAATGAACCATCTGTTGTTGATTTCTTCTCTTCCACTCTAGGCAAGGAATTTGAAGAAATTGGGGTTATATATGACAAGTACTGCGAAGCAATGAGGGACCTTTCACTAGCATTAACCGAGCTCTTAGGAATAAGCTTGGGATTGGAGAGATCGCATTTTCGCAAGTTTTTCGAAGATGGAAGCTCCATAATGCGATTGAACAGCTACCCAATTTGCGAACAAGGCGGCCTGGCCCTCGGCACTGGGCCTCATTGCGATCCAACAGCCTTGACCATCCTCCACCAGGACCAGGTCGGTGGGCTCGAAGTCTTTGCCAACAACCAATGGCACTCCGTTCCTCCCTCTCCTAATACACTCGTTGTTAACATTGGTGACCTTTTCATGGCACAGTGTAACGGAGAATACAAAAGCTGCGTGCATAGGGCGGTGGTGAACAAGCACAAGGAGAGGAGGTCATTGGCATTCTTCCTTTGTCCAAGGAAAGACAAGGTAGTGAGGCCGCCAGAGAAACTCGTCGCTGACGACGAGTCCAGAAAGTATCCGGATTTTTCGTGGTCAGAGCTGCTTGAATTCACACAAAAACACTACAGAGCCGATGCGGTAACGCTTCAAAACTTCACCAAATGGGTCGTGTCCTCGAGGACATGTGGTCTTTAG 1107 46.34 MASPLPLCHTYYFFIIMDSNASQLDSQEQAPNEALPFLHTSKLTHKILFVPSKFIWPKGDLVEAYEKLSEPHVDLEGFLKGDKKATIEASQLVRKACLKHGFFQVINHGGLSIPPCQNVGFSTAHSNRFSSKLPWKETFSFGFDHCNRFNNEPSVVDFFSSTLGKEFEEIGVIYDKYCEAMRDLSLALTELLGISLGLERSHFRKFFEDGSSIMRLNSYPICEQGGLALGTGPHCDPTALTILHQDQVGGLEVFANNQWHSVPPSPNTLVVNIGDLFMAQCNGEYKSCVHRAVVNKHKERRSLAFFLCPRKDKVVRPPEKLVADDESRKYPDFSWSELLEFTQKHYRADAVTLQNFTKWVVSSRTCGL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10817073 10820053 + PI0020964.1 Cmetu03g0027 350171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0027 368 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 72 339 - -
Cmetu03g0027 368 FunFam Gibberellin 20 oxidase 2 111 347 - -
Cmetu03g0027 368 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 210 309 IPR005123 -
Cmetu03g0027 368 Gene3D - 40 341 IPR027443 -
Cmetu03g0027 368 Pfam 2OG-Fe(II) oxygenase superfamily 212 309 IPR044861 -
Cmetu03g0027 368 SUPERFAMILY Clavaminate synthase-like 46 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0027 K05282 - - csv:101209625 656.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0027 Cmetu-Chr3:10817073 Cmetu08g0534 Cmetu-Chr8:17999668 4.20E-107 dispersed
Cmetu03g0027 Cmetu-Chr3:10817073 Cmetu12g0330 Cmetu-Chr12:4139503 3.10E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24