Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0036 ATGAAAGCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCCCCTTCACCCTCGCACTACAGGACCACCGCGATCTTCACTCCTTCTCCTCGGATTGCTTCTCCGTCAACAGCCGTCGGCGGCGCTTTCTCGTCTTGTTGTACGCATTTGACTCACTTTCCACAGCATCCATCTTCCTTCTCGCCTCTGCGATGCAATGTGAGGAAGACGGTGCCGGATCAAGAAATGGCGTCCACCGATAAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTTAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTCGTGCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACTGATAAAATTGAGATGCATGTGGGAGCTGTTGAAGCTGGAGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGCGTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGAGGTGGTCGAGTGTGCATGTGTGATCGAGCTGGATGGACTAAAGGGCCGTGAACGATTGGGAGACAAACCTCTATTCGTTCTAGTTAATGCAGTAGGATGA 777 48.39 MKAVSNLTSSLPLSPSPSHYRTTAIFTPSPRIASPSTAVGGAFSSCCTHLTHFPQHPSSFSPLRCNVRKTVPDQEMASTDKQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLRAAIRLLERVGVEVVECACVIELDGLKGRERLGDKPLFVLVNAVG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1042423 1045884 - PI0026209.1 Cmetu03g0036 350180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0036 258 SUPERFAMILY PRTase-like 88 250 IPR029057 -
Cmetu03g0036 258 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 76 255 - -
Cmetu03g0036 258 Pfam Phosphoribosyl transferase domain 128 242 IPR000836 -
Cmetu03g0036 258 FunFam Adenine phosphoribosyltransferase 1 77 256 - -
Cmetu03g0036 258 Hamap Adenine phosphoribosyltransferase [apt]. 89 256 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cmetu03g0036 258 Gene3D - 76 256 IPR029057 -
Cmetu03g0036 258 CDD PRTases_typeI 123 253 IPR000836 -
Cmetu03g0036 258 NCBIfam adenine phosphoribosyltransferase 90 255 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0036 K00759 - - csv:101208231 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0036 Cmetu-Chr3:1042423 Cmetu03g1736 Cmetu-Chr3:4395659 8.90E-72 dispersed
Cmetu03g0036 Cmetu-Chr3:1042423 Cmetu06g2098 Cmetu-Chr6:28332580 1.90E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu11g1361 . 68 558 PRT Gene Family AT2G16570 84.4 4.4e-241 830.9
Cmetu11g1361 . 73 558 PRT Gene Family AT4G34740 85.4 1.2e-241 832.8
Cmetu11g1361 . 30 531 PRT Gene Family AT4G38880 70.9 8.8e-199 690.3
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu06g2098 . 6 99 PRT Gene Family AT4G22570 88.3 1.9e-44 175.3
Cmetu09g1236 . 6 104 PRT Gene Family AT4G22570 81.8 7.2e-44 173.3
Cmetu03g0036 . 80 172 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Cmetu03g1736 . 11 100 PRT Gene Family AT4G22570 77.8 5.0e-37 150.6
Cmetu06g2098 . 7 98 PRT Gene Family AT4G12440 88.0 2.3e-41 164.9
Cmetu09g1236 . 1 96 PRT Gene Family AT4G12440 83.3 1.2e-40 162.5
Cmetu03g0036 . 76 171 PRT Gene Family AT4G12440 79.2 5.4e-38 153.7
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0725 . 1 186 PRT Gene Family AT1G71750 64.0 4.6e-68 254.6
Cmetu01g0408 . 16 468 PRT Gene Family AT1G55810 85.4 2.7e-225 778.1
Cmetu06g0579 . 19 482 PRT Gene Family AT1G55810 73.3 3.3e-199 691.4
Cmetu01g0408 . 65 467 PRT Gene Family AT3G27440 77.2 1.7e-184 642.5
Cmetu06g0579 . 80 482 PRT Gene Family AT3G27440 75.4 9.4e-180 626.7
Cmetu06g0579 . 1 482 PRT Gene Family AT3G27190 86.3 2.7e-247 851.3
Cmetu01g0408 . 3 467 PRT Gene Family AT3G27190 74.2 1.6e-207 719.2
Cmetu08g1944 . 3 273 PRT Gene Family AT3G53900 57.2 7.1e-81 297.7
Cmetu01g0408 . 1 468 PRT Gene Family AT4G26510 84.5 5.3e-232 800.4
Cmetu06g0579 . 11 482 PRT Gene Family AT4G26510 75.2 2.2e-209 725.3
Cmetu06g0579 . 1 482 PRT Gene Family AT5G40870 86.5 3.6e-247 850.9
Cmetu01g0408 . 3 470 PRT Gene Family AT5G40870 73.4 2.8e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139