Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0103 ATGGTGATGCCGGAGTCGTCTGAGGGCCACCGTACGGCTTCTCGGCGAGCAAATCGACCGCTTGTCGGACCTAGGGTTCCACTGAGACGGTTACTAAGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTTTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGTGGACCGATTTCTGGTCTCTTTGTTCAACCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGTCGTCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCTATAGTACTCGCTGTTTTGATTATTGGTCACTCGGCAGACATTGGTTGGTGGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTAGTTGGTTTTTGGATTCTCGATGTAGCTAACAACGTCTCCCAAGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATTGCTGTTGGTAATATTTTTGGATATGCAACTGGATCTGTTAGTGGCTGGTACAAGATCTTCCCATTTACTCTCACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATTGTGTTCATTTCAATTACAACATATTTGAGTGTATCGGCAGCTCAAGAGATACCCCTAGTTTCAAATGACAGGTCCTCCCTGGTTTTAGAAGAAAGTATGGGGGACAGTCATGCTTCAGAAGCATTTCTCTGGGACTTGTTTCACACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTCATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGACTTATAGTTTGGGAGTCAGAATGGGAGCATTTGGTCTGACGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATTTCTAATATTTTTATGGCTATATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTATAGTGTTCCATATGCCATGATCTCCTCACGCGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTGTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGGTGCTCAGAACCCCAGAAACCTCACATGA 1509 45.2 MVMPESSEGHRTASRRANRPLVGPRVPLRRLLSVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPISGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLIIGHSADIGWWIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAVGNIFGYATGSVSGWYKIFPFTLTSACSVNCANLKSAFLIDIVFISITTYLSVSAAQEIPLVSNDRSSLVLEESMGDSHASEAFLWDLFHTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQTYSLGVRMGAFGLTCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMAICFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3203774 3210445 - PI0028895.1 Cmetu03g0103 350247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0103 502 NCBIfam sucrose/proton symporter 26 493 IPR005989 GO:0005886|GO:0008515|GO:0015770
Cmetu03g0103 502 Gene3D MFS general substrate transporter like domains 28 489 IPR036259 -
Cmetu03g0103 502 CDD MFS_SLC45_SUC 31 488 - -
Cmetu03g0103 502 FunFam Sucrose transport protein 25 490 - -
Cmetu03g0103 502 Pfam MFS/sugar transport protein 43 440 - -
Cmetu03g0103 502 PANTHER SUGAR TRANSPORTER 26 488 - -
Cmetu03g0103 502 SUPERFAMILY MFS general substrate transporter 29 493 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0103 K15378 - - csv:101220384 948.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0103 Cmetu-Chr3:3203774 Cmetu05g0673 Cmetu-Chr5:11682831 8.70E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu03g0103 . 28 491 Sucrose Transporter Gene Family AT1G22710 52.8 7.5e-139 491.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G22710 64.9 5.6e-126 448.4
Cmetu05g0673 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu05g0952 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu03g0103 . 21 491 Sucrose Transporter Gene Family AT2G14670 51.8 1.8e-134 476.5
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT2G14670 65.1 1.8e-126 449.9
Cmetu05g0673 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0952 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G66570 64.2 4.2e-125 445.3
Cmetu03g0103 . 21 419 Sucrose Transporter Gene Family AT1G66570 50.6 4.5e-111 398.7
Cmetu09g0159 . 159 611 Sucrose Transporter Gene Family AT2G02860 70.2 1.3e-185 646.4
Cmetu05g0673 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu05g0952 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G06170 50.7 1.4e-129 460.3
Cmetu05g0659 . 8 322 Sucrose Transporter Gene Family AT5G06170 63.9 3.4e-120 429.1
Cmetu05g0673 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu05g0952 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G43610 51.2 3.3e-131 465.7
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT5G43610 65.1 1.3e-124 443.7
Cmetu03g0103 . 14 498 Sucrose Transporter Gene Family AT1G09960 71.0 6.2e-202 700.7
Cmetu05g0673 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0952 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0659 . 8 333 Sucrose Transporter Gene Family AT1G09960 54.8 1.1e-102 370.9
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu03g0103 . 27 502 Sucrose Transporter Gene Family AT1G71880 52.3 4.3e-134 475.3
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G71880 61.7 6.6e-119 424.9
Cmetu05g0673 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0952 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT1G71890 62.0 6.2e-117 418.3
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu03g0103 . 27 502 Sucrose Transporter Gene Family AT1G71880 52.3 4.3e-134 475.3
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G71880 61.7 6.6e-119 424.9
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu03g0103 . 28 491 Sucrose Transporter Gene Family AT1G22710 52.8 7.5e-139 491.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G22710 64.9 5.6e-126 448.4
Cmetu09g0159 . 159 611 Sucrose Transporter Gene Family AT2G02860 70.2 1.3e-185 646.4
Cmetu03g0103 . 14 498 Sucrose Transporter Gene Family AT1G09960 71.0 6.2e-202 700.7
Cmetu05g0673 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0952 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0659 . 8 333 Sucrose Transporter Gene Family AT1G09960 54.8 1.1e-102 370.9
Cmetu05g0673 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0952 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT1G71890 62.0 6.2e-117 418.3
Cmetu05g0673 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu05g0952 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G43610 51.2 3.3e-131 465.7
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT5G43610 65.1 1.3e-124 443.7
Cmetu05g0673 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0952 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G66570 64.2 4.2e-125 445.3
Cmetu03g0103 . 21 419 Sucrose Transporter Gene Family AT1G66570 50.6 4.5e-111 398.7
Cmetu05g0673 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu05g0952 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu03g0103 . 21 491 Sucrose Transporter Gene Family AT2G14670 51.8 1.8e-134 476.5
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT2G14670 65.1 1.8e-126 449.9
Cmetu05g0673 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu05g0952 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G06170 50.7 1.4e-129 460.3
Cmetu05g0659 . 8 322 Sucrose Transporter Gene Family AT5G06170 63.9 3.4e-120 429.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30