Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0115 ATGGGTACGGCTTCAACTGGGTACCCATTTGGAATCACTGTTCATTCATATGGAAACTCTGCAGTTTTATCTCGTAAATTGGAATTCTCGTGCTCTAATTTCCCTTTCCCGGCTGAATTTTCAAGAATCAATCCAAACTCCGGCTCTGTTTTCCATTTTTCTTCCAAGTCATCAGTTTGTAAGATCCATAGTTTGCCTGACATTGATAATATCTTCTGGGATAAAGTTCCAACGCCGCTACTTGATGTGATTGATAATCCTATCCATTTGAAGAATTTGTCTCTTAAGGAATTGAAACAATTGGCTGAAGAAATTCGTTCAGAATTGTCTTCCTTTCTTTCAAACGTACCAGCATCTTATAAGGCCAGTTTGGCAGTTGTGGAGCTGACTGTTGCCTTGCACCATGTTTTCCATGCTCCAGTGGACAAGATACTGTGGGATGCAGGAGAAGAGACCTATGCACACAAGATTCTTACCGGAAGACGATCTCTCATGAGTACATTGCATAAAAAGAATGGTCTTTCTGGGTCCACATCTCGGTTGGAAAGTGAATTTGATCCATTTGGTGCTGCCCATGGCTGCAATAGTGTATCTGCTGGACTTGGCATGGCAGTAGCAAGGGATATAAAAGGTAAACGTGAAAGAATAGTTACGATAATTAACAATGTGTCAACTATGACGGGGCAAATATATGAAGCAATGAGTAATGTGGGATATTTGGACTCAAATATGATAGTGATATTAAATGACAGTCGGCATTCTTTACACCCAAAACTTGATGATGGCTCTAAGACATCTGTTAGTGCTTTGTCTAGCACCCTCAGCAGGCTCCAGTCCAGCAAATCCTTTCGAAAGTTTCGTGAAGCTGCTAAGGGTGTAACTAAAAGAATTGGTAAGGGAATGCATGAATTGGCTGCCAAGGTTGACCAATATGCTCGCGGCATGATGGGTCCCTCAGGATCAACCCTTTTTGAAGAACTTGGACTCTATTATATTGGCCCTGTTGATGGCCACAATATGGAGGACCTCATTTGTGTTTTACAAGAAGTTGCATCACTTGATTCCATGGGTCCAGTATTGGTACATGTCGTAACTGAAGAAAACTATTCAGTAGAAGGCTATCAGAGGGTTGCAGGCAGGCAACTGGATGGTTTATATAACATAGACCCATTGCTGTACGGAATTGATTCTCGAACATATAGCGATTGTTTTGCGGAGGCTTTAGTTGTGGAGGCGGAGAAGGACAAAAGCATTGTGACAGTGCATGCTGGGATGCAGATGGAGCCATCAATTCAACTGTTTAGGGAAAGATTTCCTGATAAGTTCTTTGATGTGGGTATGGCTGAGCAACACGCAGTTACGTTTGCTGCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGTGTAATTCCTTCGGCTTTCTTACAGAGGGCATATGATCAGGTGGTGCATGATGTCGATCAACAGAGAATTCCTGTACGTTTTGTTATTACCAGTGCTGGATTGGTTGGATCTGATGGTCCTACACAAAGTGGTGCATTTGATATAACATATATGTCGTGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGAATGAGCTAGTGCACATGGTTGCCACGGCAGCGTGCATTGATGATCAACCAGTATGCTTTCGATATCCAAGAGGCTCCATTGTCACCACTAACAACCTTGCCCTTGAAGGGGTTCCGATTGAAATTGGAAAAGGGAGGGTTCTTGCTGAGGGTAAGGATGTTGCTTTGCTTGGGTATGGTGCAATGGTTCAGAACTGCCTTAATGCTCGGGCCCTTCTCTCAAAGTTCGGTGTCGAGGTTACAGTTGCTGATGCAAGGTTCTGCAAGCCACTTGACATAGCACTTCTTCGGCAACTCTGTGATAACCATGCATTTCTAATCACAGTTGAGGAAGGTTCAGTCGGAGGCTTTGGATCTCATGTTGCACAATTCATTGCCCTCGATGGACGACTGGATGGAAGAGTCAAGTGGCGACCAATAGTTCTACCAGATAATTACATAGAGCAGGCATCACCACAACAACAGCTCTCCCTTGCCGGGTTGACTGGAAATCACATCGCTGCAACGGCATTGAGCTTGCTCGGCCGCCCTCGGGAGGCGTTACTTATGATGTGTTAG 2157 44.09 MGTASTGYPFGITVHSYGNSAVLSRKLEFSCSNFPFPAEFSRINPNSGSVFHFSSKSSVCKIHSLPDIDNIFWDKVPTPLLDVIDNPIHLKNLSLKELKQLAEEIRSELSSFLSNVPASYKASLAVVELTVALHHVFHAPVDKILWDAGEETYAHKILTGRRSLMSTLHKKNGLSGSTSRLESEFDPFGAAHGCNSVSAGLGMAVARDIKGKRERIVTIINNVSTMTGQIYEAMSNVGYLDSNMIVILNDSRHSLHPKLDDGSKTSVSALSSTLSRLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDQYARGMMGPSGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGPVLVHVVTEENYSVEGYQRVAGRQLDGLYNIDPLLYGIDSRTYSDCFAEALVVEAEKDKSIVTVHAGMQMEPSIQLFRERFPDKFFDVGMAEQHAVTFAAGLSCGGLKPFCVIPSAFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPTQSGAFDITYMSCLPNMIVMAPSDENELVHMVATAACIDDQPVCFRYPRGSIVTTNNLALEGVPIEIGKGRVLAEGKDVALLGYGAMVQNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSVGGFGSHVAQFIALDGRLDGRVKWRPIVLPDNYIEQASPQQQLSLAGLTGNHIAATALSLLGRPREALLMMC 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4114594 4118780 + PI0000226.1 Cmetu03g0115 350259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0115 718 CDD TPP_DXS 122 366 IPR005477 GO:0008661|GO:0016114
Cmetu03g0115 718 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 397 565 - -
Cmetu03g0115 718 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 80 708 IPR005477 GO:0008661|GO:0016114
Cmetu03g0115 718 ProSitePatterns Transketolase signature 2. 504 520 IPR020826 -
Cmetu03g0115 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 459 IPR029061 -
Cmetu03g0115 718 SMART Transket_pyr_3 398 563 IPR005475 -
Cmetu03g0115 718 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 576 708 - -
Cmetu03g0115 718 CDD TPP_PYR_DXS_TK_like 404 557 - -
Cmetu03g0115 718 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 83 705 IPR005477 GO:0008661|GO:0016114
Cmetu03g0115 718 Pfam Transketolase, pyrimidine binding domain 399 559 IPR005475 -
Cmetu03g0115 718 Gene3D - 398 571 - -
Cmetu03g0115 718 Pfam Transketolase, C-terminal domain 576 699 IPR033248 -
Cmetu03g0115 718 Coils Coil 95 115 - -
Cmetu03g0115 718 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 81 365 IPR005477 GO:0008661|GO:0016114
Cmetu03g0115 718 Gene3D - 576 707 IPR009014 GO:0003824
Cmetu03g0115 718 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 55 716 IPR005477 GO:0008661|GO:0016114
Cmetu03g0115 718 Gene3D - 73 372 - -
Cmetu03g0115 718 SUPERFAMILY TK C-terminal domain-like 571 707 IPR009014 GO:0003824
Cmetu03g0115 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 398 586 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0115 K01662 - - csv:101220427 1379.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0115 Cmetu-Chr3:4114594 Cmetu11g1657 Cmetu-Chr11:4519883 2.60E-222 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g434 . . . . . . . . . Cmo12g00271 . . . Car12g00300 Sed03g1587 Cpe07g00279 . Bhi04g01008 Tan02g2694 Cmetu03g0115 . Hepe10g0276 . Lcy13g1755 . . . . . . . Cone4ag1813 Cone7ag1723 . . . . . Cme03g01650 Blo17g00027 . . Bda13g01272 Bpe14g00571 . . Bma02g00033 . . . . Cma12g00319 . . . . . . . . . . . Cla08g01305 Cam08g1766 Cec08g1347 Cco08g1468 Clacu08g1462 . Cre08g1249 Lsi08g01169 . Chy03g01151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010569 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 31