Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0122 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTCCGATTTCATCTCCTTCGCTCTCACTCTAACCATCGCGACATGTCGTCTTCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTATCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAGGCACATTCTACAGTTTCTACGATAGACTTGAAACGAGCATACGATATTAATGATTCCGAGGCTTTGGCTAGTAGACAAGTCGTCGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGCGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTGAAGTTGCAGAAAAATTCAAAGTCTAAGACTCAAAAATCAATAGATGACCCTGTTGATAGTCCTAATCAATCTACTAACGGTCGGTATGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTGAAGGTTCAAAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGACCTCAAGAGCTCAACGAGCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTCATAAGGATGAAACAAGAACTTCTTAGAAATCTCGAGCAAAATGCAAATCACAGGAAGAACCTTTTTATAACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTGCCTGATCCAGACGAGGAGGCTTGTTTTTCTGAGAGGCAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGACTGCAAAACAAGAGCTGGAAGAAAATACTTCCAAGCAAGAGAAACTATGTTTAGCACAGCAGAAGAATTCTAACATATTTACCAACAATACTTGTTCTCGTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCCTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCACAAGTGAGTATTACGCATTTATGGGTGAGGAACACAACTTTTAACTTGTCCCGGAAGACGAACAATATCAAGAAACTCTGGTTTTCTTTATGGATCACGACACAATTTTTTCCCATCAAAGAGGCCGCGATATTTCGACAGTTTTCCATTTCTTACAGAAAAATTACTTCCGAAGGGATTACTCAGATAATAAAGGAGAGTAAAAATGAAGTGTTATCAACTCTCAGCCCAAAGATATGA 1425 40.77 MSNAVEDLILRHRHSDFRFHLLRSHSNHRDMSSSSSSSALALPPQCCLQYHRPSPPSDQSNACDGRLAPEAHSTVSTIDLKRAYDINDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSKTQKSIDDPVDSPNQSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNEQVGRLKDEVKSLYADERRLDELIRMKQELLRNLEQNANHRKNLFITEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPIDLYLLRTAKQELEENTSKQEKLCLAQQKNSNIFTNNTCSRFQEFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWVRNTTFNLSRKTNNIKKLWFSLWITTQFFPIKEAAIFRQFSISYRKITSEGITQIIKESKNEVLSTLSPKI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2332835 2337385 - PI0020946.1 Cmetu03g0122 350266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0122 474 FunFam E2F transcription factor 1 147 220 - -
Cmetu03g0122 474 SMART E2F_TDP_2 153 218 IPR003316 GO:0005667|GO:0006355
Cmetu03g0122 474 MobiDBLite consensus disorder prediction 97 155 - -
Cmetu03g0122 474 MobiDBLite consensus disorder prediction 140 155 - -
Cmetu03g0122 474 Gene3D - 225 335 - -
Cmetu03g0122 474 Pfam E2F/DP family winged-helix DNA-binding domain 155 218 IPR003316 GO:0005667|GO:0006355
Cmetu03g0122 474 SUPERFAMILY E2F-DP heterodimerization region 229 333 IPR037241 -
Cmetu03g0122 474 CDD E2F_DD 229 333 IPR032198 GO:0046983
Cmetu03g0122 474 Coils Coil 245 268 - -
Cmetu03g0122 474 SUPERFAMILY Winged helix DNA-binding domain 153 216 IPR036390 -
Cmetu03g0122 474 PANTHER TRANSCRIPTION FACTOR E2F 109 409 IPR015633 GO:0000978|GO:0006357
Cmetu03g0122 474 MobiDBLite consensus disorder prediction 97 121 - -
Cmetu03g0122 474 Pfam E2F transcription factor CC-MB domain 234 333 IPR032198 GO:0046983
Cmetu03g0122 474 Gene3D - 147 220 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0122 K06620 - - csv:101211469 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0122 Cmetu-Chr3:2332835 Cmetu08g1984 Cmetu-Chr8:17838097 1.50E-53 dispersed
Cmetu03g0122 Cmetu-Chr3:2332835 Cmetu02g0961 Cmetu-Chr2:24031801 3.70E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7508 PF16421 E2F_CC-MB 1.00E-26 No_clan Cmetu TF