Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0129 ATGGATTCAGTGGAGGCTATCGAGGAGTTGGCTCAGTTGTCGGACTCCATGCGGCAAGCTGCCGCTTTGCTTGCCGATGAGGATGTCGATGAAACTTCCACCTCCGGTGCTTCCTCTCGTAGGCCTTCTACTTTCCTTAACGTTGTTGCCCTCGGGAATGTGGGAGCTGGCAAATCTGCAGTTTTAAATAGCTTGATTGGACATCCTGTTTTGCCAACTGGGGAAAATGGTGCTACTAGGGCTCCCATAAGCATTGATTTACAGAGGGATGGCTCATTGAGCAGCAAATCAATCATCTTGCAAATCGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGACATTCTCTGCAGGACAGATTGAGTAAAAGTTCATCTGGCAAGAGCCGAGATGAAATATATTTGAAGCTTCGCACTAGTACAGCACCTCCGTTGAAATTGATTGATTTACCTGGGCTTGATCAGCGGAGCGTGAGTGAATCAATGATTAGTGAATATGGCGAGCACAATGATGCCATTTTGCTAGTCATTGTACCTGCCTCTCAAGCAGCTGAGATTTCTTCAACTCGTGCACTCAGAATGGCTAAGGAATATGATGGTGAAGGAACTAGAACTATTGGGATAATTAGTAAAATAGATCAAGCTGCTTCAGATCAGAAATCTCTTGCTGCTGTACAGGCTTTATTATTAAATCAAGGACCACCAAGGGCTTCAGATATACCATGGATTGCTTTAATTGGTCAGTCTGTTTCAATTGCTACTGCACAGTCTGGTTCTAGTGAAAGTCTGAAATCCATACTGACCGGAGCCCCTCAGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTGGCTCATCAAATACGGAACCGTATGAAAGTCAGACTTCCAAACCTATTATCAGGGCTGCAAGGAAAGTCTCAGATTGTTCAAGAGGAGTTATCGAAACTTGGTGACCAAATGGGGGAAAGTGCTGAAGGGACAAGAGCTGTAGCTTTGCAGCTCTGCCGTGAATTTGAAGATAAGTTTCTTCAGCACATTGCAACTGGTGAGGGTGCTGGTTGGAAAATTGTTGCTAGTTTCGAGGGAAACTTTCCAAACAGAATCAAACAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTCAAGAGGATTGTGTTAGAAGCTGATGGTTATCAACCATATTTGATATCTCCTGAAAAGGGTTTGCGATCTTTAATAAAAGGTGTTCTAGAGCTTGCAAAAGAACCATCTCGTCTTTGTGTCGATGAGGTTCATCGCGTTCTAGTGGATATAGTTTCTGCTGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCACCTTTCAAGAGAGAGATTGTCGCTCTCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAGAATGGTAGTTGCACTGGTTGACATGGAGCGAGCTTTTGTGCCTCCTCAACATTTTATTCGATTGGTACAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAAGTGAAATATAAATCGTCAAAGAAAGGTCAAGAGGCAGAGCAAGCAATATTAAACAGGGCGTCTAGTCCTCAAACCGGTGGTCAACAAAGTAGTGGAAGTCTGAAATCAATGAAGGAAAAACCAGGCAAAGAGGACAAAGAAGTACAGGAAATTTCTGGTTTGAAAACTGCAGGTCCAGAAGGGGAAATAACAGCAGGTTTTCTGTTAAAGAAAAGTGCCAAAACAAGTGGATGGAGTAAAAGATGGTTTGTTCTAAATGAGAAAACCGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTCCGTGGTGTGATCACTTTGGAGGAATGTAATGTTGAGGAGGCTTCAGATGAGGAAGAAGCTTCTTCAAAGAGTTCAAAGGATAAGAAAGCTAATGGACCAGATTCTGGAAAAGGTCTCGTCTTCAAGATCACGAGCAAGGTTGCATATAAAACCGTTCTTAAAGCACATAACGCTGTTGTCTTGAAGGCTGAAAATATGGCTGACAAGATTGAATGGATGAATAAGATACGAAGTATTATTCAACCTTCCAGAGGACCAATGAAGGGTCCTGAAAGTGGTCTTTCCATGCGGCAGAGTCTTTCGGATGGTTCTCTTGATACGATGAATAGAAGACCCGTTGATCCTGAAGAGGAACTACGGTGGATGTCCCAAGAAGTTCGTGGCTATGTTGAAGCTGTCTTGAACAGTTTGGCTGCCAATGTCCCGAAAGCAGTTGTACTCTGCCAAGTTGAGAAAGCCAAGGAAGATATGTTAAATCAGTTGTATAGTTCCATCAGTGCTCAAAGCACACCAAGGATAGAGGAGCTACTTCTTGAGGATCACAATGTAAAGAATAAGAGAGAGCGTTGCCAAAAACAATCATCTCTTCTTTCTAAATTGCTACGCCAACTCAGCGTACATGACAACCGAGCAGCTGCTGCAGCCAGCTGGTCCGATAGTGGTGCAGAAAGCAGTCCGAAAACGAGTGCTTCATCAGGTGAAGACTGGAAATCTGCATTTGACGCTGCAGCCAATGGTCGTGCGAACTACAATAGATCTTCATCCAATGGTCATAGTCGACGTTATAGTGATCCAGATCAAAATGGGGATTCGAACTCACGTTCAAGTTCCAACAGTCGTCGCACTCCAAATCGGATGCCTCCACCCCCTCCACCATCTTCGGGTTCAAAATACTATTAG 2727 43.93 MDSVEAIEELAQLSDSMRQAAALLADEDVDETSTSGASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKSSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYGEHNDAILLVIVPASQAAEISSTRALRMAKEYDGEGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPPRASDIPWIALIGQSVSIATAQSGSSESLKSILTGAPQSKLGRIALVDALAHQIRNRMKVRLPNLLSGLQGKSQIVQEELSKLGDQMGESAEGTRAVALQLCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSAAANSTPGLGRYPPFKREIVALASAALDGFKNEAKRMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKYKSSKKGQEAEQAILNRASSPQTGGQQSSGSLKSMKEKPGKEDKEVQEISGLKTAGPEGEITAGFLLKKSAKTSGWSKRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEASDEEEASSKSSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVVLKAENMADKIEWMNKIRSIIQPSRGPMKGPESGLSMRQSLSDGSLDTMNRRPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERCQKQSSLLSKLLRQLSVHDNRAAAAASWSDSGAESSPKTSASSGEDWKSAFDAAANGRANYNRSSSNGHSRRYSDPDQNGDSNSRSSSNSRRTPNRMPPPPPPSSGSKYY 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26082720 26096613 + PI0015228.1 Cmetu03g0129 350273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0129 908 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 298 IPR030381 GO:0005525
Cmetu03g0129 908 SMART PH_update 568 692 IPR001849 -
Cmetu03g0129 908 Pfam Dynamin GTPase effector domain 726 810 IPR003130 GO:0003924|GO:0005525
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 625 642 - -
Cmetu03g0129 908 Gene3D - 44 313 IPR027417 -
Cmetu03g0129 908 FunFam Dynamin-2A 686 796 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 827 844 - -
Cmetu03g0129 908 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Cmetu03g0129 908 Pfam Dynamin central region 273 489 IPR000375 -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 524 562 - -
Cmetu03g0129 908 ProSiteProfiles GED domain profile. 728 821 IPR020850 -
Cmetu03g0129 908 Pfam PH domain 572 689 IPR001849 -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 524 542 - -
Cmetu03g0129 908 FunFam Dynamin-2A 560 694 - -
Cmetu03g0129 908 SMART GED_2 723 816 IPR003130 GO:0003924|GO:0005525
Cmetu03g0129 908 FunFam Dynamin-2B isoform A 44 313 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 856 891 - -
Cmetu03g0129 908 Gene3D - 560 692 IPR011993 -
Cmetu03g0129 908 ProSiteProfiles PH domain profile. 567 690 IPR001849 -
Cmetu03g0129 908 PRINTS Dynamin signature 45 63 IPR022812 -
Cmetu03g0129 908 PRINTS Dynamin signature 201 217 IPR022812 -
Cmetu03g0129 908 PRINTS Dynamin signature 70 87 IPR022812 -
Cmetu03g0129 908 PRINTS Dynamin signature 182 200 IPR022812 -
Cmetu03g0129 908 SUPERFAMILY PH domain-like 568 690 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 543 557 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 690 721 - -
Cmetu03g0129 908 FunFam Dynamin-2A 324 531 - -
Cmetu03g0129 908 Pfam Dynamin family 48 212 IPR045063 -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 823 908 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 621 644 - -
Cmetu03g0129 908 Gene3D Dynamin, middle domain 324 525 - -
Cmetu03g0129 908 MobiDBLite consensus disorder prediction 892 908 - -
Cmetu03g0129 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 307 IPR027417 -
Cmetu03g0129 908 SMART dynamin_3 7 244 IPR001401 GO:0003924|GO:0005525
Cmetu03g0129 908 PANTHER DYNAMIN 47 812 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0129 K01528 - - csv:101220030 1576.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0129 Cmetu-Chr3:26082720 Cmetu09g1009 Cmetu-Chr9:21010568 0.00E+00 dispersed
Cmetu03g0129 Cmetu-Chr3:26082720 Cmetu06g2377 Cmetu-Chr6:2237654 1.40E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69