Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0168 ATGGGTACTGGTTGGAGGAAAGCGTTTTGTACTACCATTTCTCGAGATTCAGAATCTAATCATGTTTCTGAGAAACAGAGGAGCTCTGCTACTCCTAATCCCAGTCCTAGAAGCTGTGTTCGATTGGGTTTCTTCAGTAACCCTTCTACTCCTCGGATGCAATCTCATCAGCCATTGAGTAGTCCAGGTCTTCGTTGCCGTACTGCTCAAGATGCCACTGTTAATCAAAGTCCGACTCTTCATTGCAAAACCTCATCTTCCTCTTCATCAACTCCTAAATCTGCTAAATCCCAACGAGGGATTTTGGGTTCGAATCCTTCATCTCCTCGTTCCCCTCTTAAACTCTCTCTTTTCAAGAACAGCTTTAAGTTCAGAAGTAGCTGCGGAATTTGTTTGAATAGCGTGAAAACAGGGCATGGGACGGCGATTTACACGGCGGAGTGTGGGCATGCTTTTCATTTTCCTTGTATTGCCGCTCATGTCAGAAACCATGCCACTCTTGTTTGCCCTGTCTGCAACACCACATGGAAGGACGTTCCTCTGCTCGCCGCCCATAAGAATTTGGGCCCATTGACTCAACACGATCCCAAACCCAAGATTGAAGATAAAACCATGATTGAATCTTCCCCCAGGACAGTTAAAACCAAACTAAACCCAAAAGAAAAGGAATTCAGATCCTATGATGACGATGAGCCTCTTTTGTCTCCAACCTCCGGTGGTCGGATTATCCCAATCCCTGAGGCGGACGAGAACCAAGACGATGTGGAGGAATTTCAAGGCTTCTTCGTTGACCCAAAGCCGCCTTCCAGTTCGGTTAAATCTTCAATTCAGAGGACCAATGTACAGGTTCGACTCCTTCCTGAAACGGCGTTGATTTCATCTGGACACACCCACGAGACCTACGCGGTGGCTCTGAAAGTAAAAGCGCCGCCGCCACATCCGGGTAGAAACAGAGCAAATGCCAATTTATTAGACCCATCCCGCCGTGCGCCGATTGATTTAGTGACAGTGCTGGATGTAAGCGGAAGCATGACGGGGCCGAAACTAATGATGCTGAAGCGTGCCATGCGATTGGTCATTTCGTCGTTAGGCTCATCGGACCGCCTCGCCATCGTTGCTTTCTCTGCCACTCCTAAAAGGGTGTTGCCGTTGAGGAGAATGACGGCTCAAGGCCAACGCGCTGCCCGGCACGTGATTGACACGCTGGTCTGCAGCCAAGGAAGCAGCGTGGGAGAGGCTTTGAGAAAAGCCACAAAAGTACTGGAGGACCGGCGAGAGAGAAACCCAGTAGCTAGTATCATGCTTTTGTCAGACGGCCAAGATGAACGGATCCAGTCGAATCAACGGCAAGTGACACGACACGAGTCATCTACACGGTTTGCCCACATAGAAATCCCGGTTCATTCATTTGGGTTCGGGAAGAGCGGTGGATACTGTCAAGAACCGGCGGAGGACGCATTTGCAAAATGCGTAAGTGGATTATTAAGCGTGGTGGTCCAAGATCTCCGTATTCAACTCGGGTTTTCAACCGGTTCATCTCCAGTAGTGATCTCCGCTATTTATTCATGTACCGGGCGGCCCACGGCTTGCAGTTTGGGTTCGGTCCGGCTTGGAGATTTATACGCCGAGGAAGAAAGGGAATTACTCGTAGAGTTGAAGATTCCAACCTCGGCCTGTGGGACCCACCACGTGATGACGATGCAATGTCTTTACAAAGACCCATCCACACAAGAAGTAGTGTACAGCCGAGAGCAAGACATCCTCATTGCACGACCGACAGCCGTTGGATCATCCACTCCGAAGATCGAACGGTTGAGAGACATGTTCATAACAACTCGCGCTGTGGCGGAATCCAGGAGATTAGTCGAGTACGAAGACCATACGAGCGCGCACCATTTACTCGCGTCGGCGCGTGCATTACTAATCCAATCCGGATCAGCAAGTGCTGACGTGTACGTGCGTGAGCTGGAAGTTGAGCTGGCGGAGCTCCATTGGCGAAGGCAACAACAATTCGAATTACATCAGCAGCAGCAACAACAACAAATTTTAGTGACAACAACGCCACGTAGGCGAGGGGGTGATAAGGAAAATCCGACAATGGTGGATGAAAACGGAGAGCCGTTAACACCGACGTCGGCGTGGAGGGCGGCGGAGAAGCTTGCCAGAGTGGCGATTATGAAAAAATCGTTGACGAGTAGAGTGGGGGATTTACACGGGTTTGAAAATGCGAGATTCTAG 2238 49.96 MGTGWRKAFCTTISRDSESNHVSEKQRSSATPNPSPRSCVRLGFFSNPSTPRMQSHQPLSSPGLRCRTAQDATVNQSPTLHCKTSSSSSSTPKSAKSQRGILGSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGHGTAIYTAECGHAFHFPCIAAHVRNHATLVCPVCNTTWKDVPLLAAHKNLGPLTQHDPKPKIEDKTMIESSPRTVKTKLNPKEKEFRSYDDDEPLLSPTSGGRIIPIPEADENQDDVEEFQGFFVDPKPPSSSVKSSIQRTNVQVRLLPETALISSGHTHETYAVALKVKAPPPHPGRNRANANLLDPSRRAPIDLVTVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAIVAFSATPKRVLPLRRMTAQGQRAARHVIDTLVCSQGSSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERIQSNQRQVTRHESSTRFAHIEIPVHSFGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFSTGSSPVVISAIYSCTGRPTACSLGSVRLGDLYAEEERELLVELKIPTSACGTHHVMTMQCLYKDPSTQEVVYSREQDILIARPTAVGSSTPKIERLRDMFITTRAVAESRRLVEYEDHTSAHHLLASARALLIQSGSASADVYVRELEVELAELHWRRQQQFELHQQQQQQQILVTTTPRRRGGDKENPTMVDENGEPLTPTSAWRAAEKLARVAIMKKSLTSRVGDLHGFENARF 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3168009 3171114 + PI0005188.1 Cmetu03g0168 350312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0168 745 SMART VWA_4 331 512 IPR002035 -
Cmetu03g0168 745 SUPERFAMILY RING/U-box 127 178 - -
Cmetu03g0168 745 Pfam RING-like zinc finger 128 157 IPR001841 -
Cmetu03g0168 745 MobiDBLite consensus disorder prediction 687 709 - -
Cmetu03g0168 745 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 126 740 - -
Cmetu03g0168 745 CDD vWA_C3HC4_type 332 499 - -
Cmetu03g0168 745 Gene3D von Willebrand factor, type A domain 333 493 IPR036465 -
Cmetu03g0168 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 233 IPR013083 -
Cmetu03g0168 745 MobiDBLite consensus disorder prediction 24 110 - -
Cmetu03g0168 745 MobiDBLite consensus disorder prediction 15 110 - -
Cmetu03g0168 745 Pfam von Willebrand factor type A domain 334 440 IPR002035 -
Cmetu03g0168 745 SUPERFAMILY vWA-like 331 491 IPR036465 -
Cmetu03g0168 745 ProSiteProfiles VWFA domain profile. 333 473 IPR002035 -
Cmetu03g0168 745 ProSiteProfiles Zinc finger RING-type profile. 128 173 IPR001841 -
Cmetu03g0168 745 SMART ring_2 128 172 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0168 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0167 Cmetu-Chr3:7008496 Cmetu03g0168 Cmetu-Chr3:3168009 8.60E-72 transposed
Cmetu04g1705 Cmetu-Chr4:3246251 Cmetu03g0168 Cmetu-Chr3:3168009 8.30E-35 transposed
Cmetu11g1592 Cmetu-Chr11:5670217 Cmetu03g0168 Cmetu-Chr3:3168009 3.00E-77 transposed
Cmetu12g0567 Cmetu-Chr12:20340123 Cmetu03g0168 Cmetu-Chr3:3168009 2.00E-62 transposed
Cmetu03g0168 Cmetu-Chr3:3168009 Cmetu08g1576 Cmetu-Chr8:20689573 4.70E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66