Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0192 ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCTTCCCAATTCTCCTCCCCCGACGACACTGATGCCGCCACCACCTCCGCCGCACCTGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACGAAGATGACGCCGTCGTTACTGACGCTGGAGGAGGAGGAGGAGGATTGTTTTACAATAATAATACTACTACTAGTGATCATAACAATAATAATTCAACGGAATCTTCCGCCGTTACCGTGATGGAGAGTTGCAATTCCTCATCCTCCTTCTTTGAAGATATTAGTGGCTCTAATTTAGGCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGCTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGAAGCCCCCACTCAATCCCCACAACCCACCGCCACTCGGACTGCAGCAGCAATTTTCAAACCGGAAATTGTTTCTGTTCCGGCCAAAGCCCGTAGCAAGCGTTCACGCGCTCTCCCATCTAATTGGAACAACTCCAGCCTCCTTCCTCTTTCTCCGACCACCGAACCTGAAATTACTACACCCATAGGACAACCGCACCTCATCAAAAAACCCCTTCCCAAGGCGGCGGCTACGGTGAAAAAGAAGGACAATCCAGAGGTAGGATTTTCATCCGGAGAGGGGCGTAAGTGCATGCACTGCGCCACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGCCCAAAAACATTGTGTAATGCTTGCGGCGTTCGGTACAAATCTGGCCGCCTAGTGCCGGAGTACCGCCCCGCCGCGAGCCCCACCTTTGTTTTAACGAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTTCGGCGGCAGAAGGAGATTGTTAGAGCCCAACAACAGCAACAACAGCATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTAA 1080 50.28 MEAPEYFQINAYSSQFSSPDDTDAATTSAAPDHFIVEELLDFSNEDDAVVTDAGGGGGGLFYNNNTTTSDHNNNNSTESSAVTVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDEAPTQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSSLLPLSPTTEPEITTPIGQPHLIKKPLPKAAATVKKKDNPEVGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEIVRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3342259 3343938 - PI0000956.1 Cmetu03g0192 350336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0192 359 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Cmetu03g0192 359 PIRSF Txn_fac_GATA_plant 11 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmetu03g0192 359 PANTHER GATA TRANSCRIPTION FACTOR 24 324 - -
Cmetu03g0192 359 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Cmetu03g0192 359 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Cmetu03g0192 359 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Cmetu03g0192 359 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Cmetu03g0192 359 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 307 - -
Cmetu03g0192 359 Gene3D - 242 293 IPR013088 GO:0006355|GO:0008270
Cmetu03g0192 359 FunFam GATA transcription factor 241 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0192 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0192 Cmetu-Chr3:3342259 Cmetu04g3117 Cmetu-Chr4:13266872 4.60E-58 dispersed
Cmetu03g0192 Cmetu-Chr3:3342259 Cmetu04g2325 Cmetu-Chr4:32071068 5.20E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0192 . 108 359 C2C2-Gata Transcription Factor Family AT5G25830 58.5 1.8e-69 260.0
Cmetu07g0573 . 15 297 C2C2-Gata Transcription Factor Family AT5G66320 52.2 8.1e-65 244.6
Cmetu04g1399 . 104 267 C2C2-Gata Transcription Factor Family AT4G36240 54.2 1.5e-41 166.8
Cmetu03g0192 . 110 359 C2C2-Gata Transcription Factor Family AT4G32890 50.5 2.3e-58 223.0
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 1.9e-137 486.5
Cmetu04g3254 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.9 1.9e-134 476.5
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.5 1.4e-118 423.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7514 PF00320 GATA 1.90E-15 CL0167 Cmetu TF