Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0215 ATGGAAAATGGCTTCTCTTCTCCTCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTAGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGAGAAACAAGTAGAGTGATGAAAGGGGTTCAACACGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCACGTATTGCGAAAAAAGATCCAAGAGGGAAGGGATATTGAAGGGCATGATGTTATTGAAGGGATCCACATACTAAGAAATGTGGCAGATAGATATGATGATAGCCAGTTCCTCAGGGGAGAGGAACTGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGATACTTCTTCCACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATTTGCACCAGAAATTTGTCAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGCAACTTCGGCCTTCGTAGTTCATTAGCCGTGCCACAAAATGATGTCACAAACAGCAGCTTTAGCTTTTCAGGTGATAACTTCCTGCTACAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGGTAGGAGTGTTCCTGAACCGATAAAGACGCAGTGTACGCAGATGAAATTCAACAACACTATTCACCCTGTTGAACCTGAAGGGAAGTTTGGAGCATTTGATCCAAGCAGCCGAAGCTGTTACCCTTGGGTTGAAGCTCCAGAGATCAAGTTCAAACAAGAAAGCAAGCCAATCGTGCATTTAGAAGGAGATTTCAATCAATTCCCCCCAACAGTTCCGCCACGCCAAGTTCAAATGGACCAACTACAATCGATTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAAAACTGTAGCCAACAGAGGGTCCATTTAAATCTACCAAAAACACCAACTGATTCATTTGCTGGGAAGGCAAAGAGTTTCAACGAGATGAATGATCATTTTGATCCTAATTCAACTACAACTACTCCATTGGGCAAAAACCAGAATTTCAATCCTAGCTACATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGACTTGCAGGGCTTTTTGCTTCAAGATGGCTGCTACTCAAAGAACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTACGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 42.11 MENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAAGRSVPEPIKTQCTQMKFNNTIHPVEPEGKFGAFDPSSRSCYPWVEAPEIKFKQESKPIVHLEGDFNQFPPTVPPRQVQMDQLQSISSISSGRSATEKDIASSIESKPPYSENCSQQRVHLNLPKTPTDSFAGKAKSFNEMNDHFDPNSTTTTPLGKNQNFNPSYISTDLGSGLPFATIDEDLQGFLLQDGCYSKNLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 352834 356935 + PI0023627.1 Cmetu03g0215 350359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0215 584 SUPERFAMILY CheY-like 16 141 IPR011006 -
Cmetu03g0215 584 FunFam Two-component response regulator 17 172 - -
Cmetu03g0215 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cmetu03g0215 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 351 IPR045279 GO:0009736
Cmetu03g0215 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Cmetu03g0215 584 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cmetu03g0215 584 Gene3D - 194 257 - -
Cmetu03g0215 584 CDD REC_typeB_ARR-like 19 133 - -
Cmetu03g0215 584 FunFam Two-component response regulator 194 257 - -
Cmetu03g0215 584 Gene3D - 17 171 - -
Cmetu03g0215 584 SMART REC_2 17 129 IPR001789 GO:0000160
Cmetu03g0215 584 PIRSF RR_ARR_type-B 1 532 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmetu03g0215 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Cmetu03g0215 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Cmetu03g0215 584 MobiDBLite consensus disorder prediction 424 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0215 K14491 - - csv:101204370 1126.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0215 Cmetu-Chr3:352834 Cmetu11g1360 Cmetu-Chr11:3939795 6.90E-72 dispersed
Cmetu03g0215 Cmetu-Chr3:352834 Cmetu06g0551 Cmetu-Chr6:5259197 1.10E-80 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu10g0771 . 1 175 Response Regulator Gene Family AT1G59940 65.4 3.9e-56 215.7
Cmetu02g1807 . 9 158 Response Regulator Gene Family AT1G59940 62.3 2.1e-46 183.3
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G59940 58.3 1.3e-40 164.1
Cmetu09g0403 . 5 150 Response Regulator Gene Family AT1G59940 61.0 1.3e-40 164.1
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G59940 57.5 3.0e-40 162.9
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G59940 58.7 5.6e-39 158.7
Cmetu10g0771 . 16 185 Response Regulator Gene Family AT1G10470 67.1 4.2e-55 211.8
Cmetu02g1807 . 29 191 Response Regulator Gene Family AT1G10470 60.8 1.8e-45 179.9
Cmetu04g1441 . 10 153 Response Regulator Gene Family AT1G10470 58.3 5.0e-40 161.8
Cmetu09g0403 . 5 155 Response Regulator Gene Family AT1G10470 57.7 8.6e-40 161.0
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G10470 56.3 1.2e-38 157.1
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G10470 60.1 1.6e-38 156.8
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu02g1807 . 30 163 Response Regulator Gene Family AT5G62920 78.4 4.3e-52 201.4
Cmetu10g0771 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.2e-49 193.4
Cmetu09g0403 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.5e-41 164.9
Cmetu04g1441 . 10 155 Response Regulator Gene Family AT5G62920 55.5 1.9e-39 159.5
Cmetu10g0872 . 2 172 Response Regulator Gene Family AT5G62920 51.2 2.7e-38 155.6
Cmetu02g1807 . 29 162 Response Regulator Gene Family AT1G19050 75.4 2.2e-49 192.6
Cmetu10g0771 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.3e-44 176.8
Cmetu04g1441 . 8 158 Response Regulator Gene Family AT1G19050 53.6 1.4e-38 156.8
Cmetu10g0872 . 9 154 Response Regulator Gene Family AT1G19050 55.5 5.2e-38 154.8
Cmetu08g0497 . 15 156 Response Regulator Gene Family AT1G19050 55.6 5.2e-38 154.8
Cmetu09g0403 . 3 152 Response Regulator Gene Family AT1G19050 52.7 3.3e-37 152.1
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT2G41310 53.7 9.9e-59 223.8
Cmetu04g1441 . 1 159 Response Regulator Gene Family AT2G41310 72.3 4.2e-57 218.4
Cmetu09g0403 . 1 151 Response Regulator Gene Family AT2G41310 65.6 5.4e-49 191.4
Cmetu10g0872 . 3 150 Response Regulator Gene Family AT2G41310 67.6 7.8e-48 187.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.2e-41 165.6
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT2G41310 61.9 3.5e-40 162.2
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT3G57040 53.9 8.1e-64 240.7
Cmetu04g1441 . 1 157 Response Regulator Gene Family AT3G57040 75.8 5.1e-58 221.5
Cmetu09g0403 . 1 154 Response Regulator Gene Family AT3G57040 66.2 7.9e-51 197.6
Cmetu10g0872 . 8 150 Response Regulator Gene Family AT3G57040 70.6 2.5e-49 192.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.5e-43 172.2
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT3G57040 62.4 1.3e-40 163.7
Cmetu02g1807 . 24 179 Response Regulator Gene Family AT1G74890 69.4 6.9e-51 197.6
Cmetu10g0771 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.7e-47 185.7
Cmetu10g0872 . 2 160 Response Regulator Gene Family AT1G74890 57.9 4.5e-42 168.3
Cmetu09g0403 . 7 144 Response Regulator Gene Family AT1G74890 58.7 6.1e-39 157.9
Cmetu08g0497 . 15 175 Response Regulator Gene Family AT1G74890 52.7 8.0e-39 157.5
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G74890 54.8 1.0e-38 157.1
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.7e-39 159.5
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT2G40670 55.0 1.7e-39 159.5
Cmetu08g0497 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.8e-37 150.6
Cmetu02g1807 . 29 160 Response Regulator Gene Family AT2G40670 58.5 1.0e-36 150.2
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT3G56380 54.8 3.2e-40 161.8
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT3G56380 55.0 1.6e-39 159.5
Cmetu02g1807 . 24 160 Response Regulator Gene Family AT3G56380 58.7 3.5e-39 158.3
Cmetu09g0403 . 11 152 Response Regulator Gene Family AT3G56380 57.3 5.0e-38 154.5
Cmetu10g0872 . 2 149 Response Regulator Gene Family AT3G56380 53.7 5.6e-37 151.0
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu12g2014 . 6 555 Response Regulator Gene Family AT5G61380 50.9 1.8e-142 503.4
Cmetu08g0676 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.4e-55 213.4
Cmetu09g1218 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.3e-45 180.3
Cmetu08g0676 . 67 206 Response Regulator Gene Family AT5G24470 55.7 4.3e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7515 PF00072 Response_reg 1.20E-24 CL0304 Cmetu TF