Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0258 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCGACGGCCACTCTCTTCTGCCGAGCTGACTCTGCTTTTCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCAGCCAACAAGCTCGCTTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCACGCCGTCATGAACGAGTTCCCGTTACGCCTTTCTACGACACATCCAACTCTGACAACTCACTCGCTGTTAAACCCAGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCTGACGCCGCCGATGTTAGTAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGTCATGTAGATCCAAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGCGTTCATCTCTCATCAGTAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTTGGAGTGGTGCCGGACGGGAACGCGATGACGGATGTATCAAATCCGTACACGAAACCATCCACGGAATCATCGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCCGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGACGTTGATCGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1014 51.78 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSVNDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4747349 4749614 - PI0027954.1 Cmetu03g0258 350402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0258 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cmetu03g0258 337 CDD Bbox1_BBX-like 5 48 - -
Cmetu03g0258 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cmetu03g0258 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cmetu03g0258 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 321 IPR045281 GO:0009909
Cmetu03g0258 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cmetu03g0258 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cmetu03g0258 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cmetu03g0258 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cmetu03g0258 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cmetu03g0258 337 CDD Bbox1_BBX-like 48 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0351 Cmetu-Chr2:21298562 Cmetu03g0258 Cmetu-Chr3:4747349 1.50E-64 dispersed
Cmetu03g0258 Cmetu-Chr3:4747349 Cmetu07g2202 Cmetu-Chr7:15818838 7.90E-28 dispersed
Cmetu03g0258 Cmetu-Chr3:4747349 Cmetu02g1363 Cmetu-Chr2:21288595 2.70E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0258 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 4.5e-42 169.1
Cmetu03g0258 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 8.4e-84 307.8
Cmetu02g0351 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.5 1.3e-57 220.7
Cmetu02g0351 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 53.4 5.2e-70 261.9
Cmetu03g0258 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 3.4e-53 206.1
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 2.5e-91 332.8
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 2.6e-88 322.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu01g0740 . 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 53.8 6.8e-48 188.3
Cmetu11g0516 . 1 175 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.3e-46 181.8
Cmetu07g0164 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 50.5 3.9e-77 285.4
Cmetu07g1596 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cmetu04g0320 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 6.4e-50 194.1
Cmetu07g1596 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 2.6e-57 218.8
Cmetu04g0320 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 2.0e-49 192.6
Cmetu01g0740 . 1 204 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 1.9e-52 203.0
Cmetu03g1194 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 6.5e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7516 PF00643 zf-B_box 3.60E-06 No_clan Cmetu TF