Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0331 ATGATGAACACCATGGGAATCTTTGAGGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAACATGAAGCTGAAGCTGTTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGAATGCTTTTGAGGCGACTCAAAGAGCAGAGTAAAGAGAAGGATGGTGCTGATAGTTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGGTTCGTTTATGGGATTATTCCTGAGAAAGGAAAACCAGTCAGTGGAGCTTCTGATAATCTTCGTGCATGGTGGAAAGAAAAGGTTAGATTCGATAGAAATGGTCCTGCAGCAATTGCCAAATATCAGGCTGACCACGCAATTCCTGGAAACAACGATGACTGCAATACAGTGGCATCCACTCCTCACACCTTACAAGAGCTTCAAGACACAACCCTTGGATCACTGTTGTCAGCTCTGATGCAGCACTGTGATCCACCTCAGAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCAACAGGAAATGAGGAATGGTGGCCTGAACTAGGACTACCAAAGGACCAGGGGCCACCTCCTTACAAGAAGCCCCATGATTTGAAGAAGGCTTGGAAAGTCAGCGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGCCAATCCAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCTATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCTGATAAATGCCCACCTGTGTCCATTTGCGGGAGCGGATCTCTTTTGATCAGCGACACTAGTGATTATGATGTCGAAGGAGTTGAAGATGAACCAAATGCCGAAGCAGAGGAAAGCAAACCCCATGATCTCAACTTCTTTAATATGGGAGCTCCTGGATCTAGGGAGAGACTTATGATGCCACCTGTGGGTCCTCAGATTAAGGAAGAATTCATGGAGAATAATTCTGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAATCAAATACGATAATGAATCCAAAGATATATACTTGTGAGTATTCTCAATGCCCTTATAACAGTCAGCGTCTCGGGTTTCTTGATAGGAATTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCATATATTTAGCATGCCAAGCTTTCAAACTAATGACGACAAATCGTCATCTCCCGTTCCACTATCCTTCGACCATCCTAAGGCACCTGCTCGGCTGATGAACCCGACTCCACCCTTCAGGGTATCAGGACTTGGACTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTCTTGAGTTTCTATGATTCTAACCTTCAACAGGACAAACCTTTGAATTCGGGTAATCTCGACATGCGAGAGGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGAGGATAACTTGTATTGTCAAGCCACAATGGTGGGAAATACTATGCCAATTCAGCAGCACCCTGATTTTTCTTCCAACAAACATCCATTCGAAGAATACAAGGCAGCATTCGATTCTCCGTTCGGCATGTATCCCAATGATAACATCACCGACTTCAGATTCGGTTCTCCATTTAACTTGGCATCAATCGATTATGCAGCAGCAGACACACAACTGCCCAAACAAGATACACCCTTGTGGTACCTTTGA 1851 45.22 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAVLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKDGADSSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNAEAEESKPHDLNFFNMGAPGSRERLMMPPVGPQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRNSRNNHQLNCPFRSDSSHIFSMPSFQTNDDKSSSPVPLSFDHPKAPARLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLNSGNLDMREDHNQQQQLPKFQLQVEDNLYCQATMVGNTMPIQQHPDFSSNKHPFEEYKAAFDSPFGMYPNDNITDFRFGSPFNLASIDYAAADTQLPKQDTPLWYL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8062848 8066570 + PI0026116.4 Cmetu03g0331 350475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0331 616 Pfam Ethylene insensitive 3 51 298 IPR047091 GO:0003700
Cmetu03g0331 616 MobiDBLite consensus disorder prediction 69 95 - -
Cmetu03g0331 616 Coils Coil 36 70 - -
Cmetu03g0331 616 Coils Coil 373 393 - -
Cmetu03g0331 616 MobiDBLite consensus disorder prediction 24 46 - -
Cmetu03g0331 616 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Cmetu03g0331 616 FunFam Ethylene insensitive 3-like 1 171 308 - -
Cmetu03g0331 616 FunFam Ethylene insensitive 3-like 1 83 161 - -
Cmetu03g0331 616 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Cmetu03g0331 616 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 32 601 IPR006957 GO:0003700|GO:0005634
Cmetu03g0331 616 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0331 K14514 - - csv:101214396 1200.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1340 Cmetu-Chr2:4350386 Cmetu03g0331 Cmetu-Chr3:8062848 8.10E-100 dispersed
Cmetu02g1832 Cmetu-Chr2:3563096 Cmetu03g0331 Cmetu-Chr3:8062848 4.60E-199 dispersed
Cmetu03g0331 Cmetu-Chr3:8062848 Cmetu07g0535 Cmetu-Chr7:3772890 2.10E-66 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1832 . 2 626 EIL Transcription Factor Family AT2G27050 58.9 5.1e-192 667.9
Cmetu03g0331 . 8 507 EIL Transcription Factor Family AT2G27050 62.5 5.5e-170 594.7
Cmetu02g1340 . 44 350 EIL Transcription Factor Family AT2G27050 57.4 9.0e-96 348.2
Cmetu02g1340 . 44 577 EIL Transcription Factor Family AT1G73730 54.5 3.7e-147 518.8
Cmetu02g1832 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.7e-105 378.3
Cmetu03g0331 . 38 335 EIL Transcription Factor Family AT1G73730 61.6 8.5e-104 374.8
Cmetu02g1832 . 3 626 EIL Transcription Factor Family AT3G20770 62.3 2.9e-209 725.3
Cmetu03g0331 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 3.7e-172 602.1
Cmetu02g1340 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cmetu02g1340 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.7e-70 262.7
Cmetu07g0535 . 23 330 EIL Transcription Factor Family AT5G10120 52.9 2.9e-84 309.7
Cmetu02g1340 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.6e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7521 PF04873 EIN3 4.10E-132 No_clan Cmetu TF