Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0381 ATGGCGGTTACACTTAGCAGAAAACTTTTTCCAGTTGCCACTGGAACTACCCAACCAATCACTAATTGTTCCGCCTGTCCTTACGACTGCCCTTACGACTGTTACGGTTTTCCAGATCTCTACTTCTCGCCGCCGCCACCGCCGCCTCCTCTTTCCGACCACCAAAAACAGCTTCCAACTATGATCATCGTCCTAATTCTTTTCGTCGCCTTTTTCTTAGCTTTTACTTTCTACATCATCGTCGTAAAATGTCGATCTTGGTACTCTGGCTCCGGCAACGAAGGAGCAGATGCGTTGCAATCGGACGGTGGAGAAGGAGAGTTTATGAACGAGAATCAAGTGGATCATCCAATTTGGTTCATTACCACCGCTGGACTTCAGCAATCAGTCATCAATTCCATTACGGTTTGCAAGTACAAAAAGAGCGAAGGTTTAATTGAAGGAACAGATTGTTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGTTGTTACCAAAATGTAGCCACGCGTTTCATATTGGGTGTGTTGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACTGATTTCACCACCTCCAACTCCGTCAGGCCACCAAATTTAGGTCCATTGAATCAAAACGAAGGTAATTTGGGTTTAAATGAAGATACCCAGATGGAGAATGAGGATATTAATGGGGAAGCTGTAAGGGAAGATGAAGGTGGTGTTGTTTCTATTTCTAGTGAGAGCTTTGAAAACAGAGGAGATGTTGTTGATGAACAAAGAGAAGTTGAGGAGATAGTTCAAAAAGAAGCGAATTTTGAATCTGATGATTCAAAAGTTGAAGGAAATGAAAGTATGAGGAACGATAATCAAATGTATTCTTCTTCAACAACAACAACAACAACATGA 921 42.13 MAVTLSRKLFPVATGTTQPITNCSACPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQLPTMIIVLILFVAFFLAFTFYIIVVKCRSWYSGSGNEGADALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTSNSVRPPNLGPLNQNEGNLGLNEDTQMENEDINGEAVREDEGGVVSISSESFENRGDVVDEQREVEEIVQKEANFESDDSKVEGNESMRNDNQMYSSSTTTTTT 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2642368 2643458 + PI0011572.1 Cmetu03g0381 350525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0381 306 MobiDBLite consensus disorder prediction 272 288 - -
Cmetu03g0381 306 PANTHER RING-H2 FINGER PROTEIN ATL16 46 288 IPR044600 GO:0016567|GO:0016740
Cmetu03g0381 306 SMART ring_2 151 192 IPR001841 -
Cmetu03g0381 306 SMART FANCL_C_2 147 201 - -
Cmetu03g0381 306 MobiDBLite consensus disorder prediction 289 306 - -
Cmetu03g0381 306 SUPERFAMILY RING/U-box 141 200 - -
Cmetu03g0381 306 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Cmetu03g0381 306 MobiDBLite consensus disorder prediction 272 306 - -
Cmetu03g0381 306 Pfam Ring finger domain 150 193 IPR001841 -
Cmetu03g0381 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Cmetu03g0381 306 FunFam RING-H2 finger protein ATL54 126 199 - -
Cmetu03g0381 306 CDD RING-H2_EL5-like 150 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0381 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0381 Cmetu-Chr3:2642368 Cmetu04g2051 Cmetu-Chr4:32487502 1.90E-36 dispersed
Cmetu03g0381 Cmetu-Chr3:2642368 Cmetu03g0828 Cmetu-Chr3:2675486 1.40E-15 proximal
Cmetu01g2487 Cmetu-Chr1:1515484 Cmetu03g0381 Cmetu-Chr3:2642368 1.90E-35 transposed
Cmetu06g2558 Cmetu-Chr6:30545764 Cmetu03g0381 Cmetu-Chr3:2642368 3.80E-13 transposed
Cmetu03g0381 Cmetu-Chr3:2642368 Cmetu04g1810 Cmetu-Chr4:31318583 3.30E-17 wgd
Cmetu03g0381 Cmetu-Chr3:2642368 Cmetu08g0935 Cmetu-Chr8:20997871 8.50E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29